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Changeset 1:34553d0caa5e (2020-01-19)

Previous changeset 0:ce8af9373061 (2017-12-19) Next changeset 2:26e6c9362b7b (2024-09-27)

Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"

modified:
macros.xml
poretools_squiggle.xml

removed:
test-data/poretools-events-out1.tabular
test-data/poretools-events-out2.tabular

diff -r ce8af9373061 -r 34553d0caa5e macros.xml
--- a/macros.xml Tue Dec 19 14:49:34 2017 -0500
+++ b/macros.xml Sun Jan 19 09:09:16 2020 -0500

[

@@ -47,4 +47,6 @@
         <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
         <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
     </xml>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
+    <token name="@profile@">18.09</token>
</macros>

diff -r ce8af9373061 -r 34553d0caa5e poretools_squiggle.xml
--- a/poretools_squiggle.xml Tue Dec 19 14:49:34 2017 -0500
+++ b/poretools_squiggle.xml Sun Jan 19 09:09:16 2020 -0500

[

@@ -1,5 +1,5 @@
<?xml version="1.0"?>
-<tool id="poretools_squiggle" name="Plot signals" version="@VERSION@.0">
+<tool id="poretools_squiggle" name="Plot signals" version="@VERSION@.1" profile="@profile@">
     <description>for nanopore reads</description>
     <macros>
         <import>macros.xml</import>
@@ -7,8 +7,8 @@
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
-        poretools squiggle '$input' --saveas $extension --num-facets $num_facets
-            $theme_bw
+@MPLBACKEND@
+poretools squiggle '$input' --saveas $extension --num-facets $num_facets $theme_bw
     ]]>
     </command>
     <inputs>
@@ -26,16 +26,16 @@
             <expand macro="test_input" />
             <param name="extension" value="png" />
             <output name="output">
-                <discovered_dataset designation="2016_3_4_3507_1_ch128_read430_strand.fast5" file="poretools-squiggle-out1-1.png" lines_diff="986" />
-                <discovered_dataset designation="2016_3_4_3507_1_ch128_read95_strand.fast5" file="poretools-squiggle-out1-2.png" lines_diff="883" />
+                <discovered_dataset designation="2016_3_4_3507_1_ch128_read430_strand.fast5" file="poretools-squiggle-out1-1.png" compare="sim_size" />
+                <discovered_dataset designation="2016_3_4_3507_1_ch128_read95_strand.fast5" file="poretools-squiggle-out1-2.png" compare="sim_size" />
             </output>
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="pdf" />
             <output name="output">
-                <discovered_dataset designation="2016_3_4_3507_1_ch128_read430_strand.fast5" file="poretools-squiggle-out1-1.pdf" lines_diff="35" />
-                <discovered_dataset designation="2016_3_4_3507_1_ch128_read95_strand.fast5" file="poretools-squiggle-out1-2.pdf" lines_diff="35" />
+                <discovered_dataset designation="2016_3_4_3507_1_ch128_read430_strand.fast5" file="poretools-squiggle-out1-1.pdf" compare="sim_size" />
+                <discovered_dataset designation="2016_3_4_3507_1_ch128_read95_strand.fast5" file="poretools-squiggle-out1-2.pdf" compare="sim_size" />
             </output>
         </test>
     </tests>

diff -r ce8af9373061 -r 34553d0caa5e test-data/poretools-events-out1.tabular
--- a/test-data/poretools-events-out1.tabular Tue Dec 19 14:49:34 2017 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000

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diff -r ce8af9373061 -r 34553d0caa5e test-data/poretools-events-out2.tabular
--- a/test-data/poretools-events-out2.tabular Tue Dec 19 14:49:34 2017 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000