| Previous changeset 18:3b22de20bd4b (2023-09-19) |
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Commit message:
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit b534dcd63f07469e6e24257a0491a8badcbfc95d |
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modified:
staramr_search.xml test-data/test1-hits/pointfinder_16S-rc_gyrA-rc_beta-lactam.fsa |
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| diff -r 3b22de20bd4b -r 3548a93b39c1 staramr_search.xml --- a/staramr_search.xml Tue Sep 19 18:41:35 2023 +0000 +++ b/staramr_search.xml Wed Dec 18 19:43:50 2024 +0000 |
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| @@ -1,14 +1,13 @@ -<tool id="staramr_search" name="staramr" version="@VERSION@+galaxy1" profile="16.04"> +<tool id="staramr_search" name="staramr" version="@VERSION@+galaxy0" profile="16.04"> <description>Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes.</description> <macros> - <token name="@VERSION@">0.10.0</token> + <token name="@VERSION@">0.11.0</token> </macros> + <xrefs> + <xref type="bio.tools">staramr</xref> + </xrefs> <requirements> <requirement type="package" version="@VERSION@">staramr</requirement> - <!-- The staramr conda package includes the mlst software, but the list of schemes - changes depending on the version. I specify the exact version here to make sure - the list of schemes provided is consistent --> - <requirement type="package" version="2.23.0">mlst</requirement> </requirements> <version_command>staramr --version</version_command> <command detect_errors="exit_code"><![CDATA[ |
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| diff -r 3b22de20bd4b -r 3548a93b39c1 test-data/test1-hits/pointfinder_16S-rc_gyrA-rc_beta-lactam.fsa --- a/test-data/test1-hits/pointfinder_16S-rc_gyrA-rc_beta-lactam.fsa Tue Sep 19 18:41:35 2023 +0000 +++ b/test-data/test1-hits/pointfinder_16S-rc_gyrA-rc_beta-lactam.fsa Wed Dec 18 19:43:50 2024 +0000 |
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| @@ -1,4 +1,4 @@ ->16S_rrsD isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 1604, contig_end: 61, database_gene_start: 1, database_gene_end: 1544, hsp/length: 1544/1544, pid: 99.94%, plength: 100.00% +>16S-rrsD_1_CP049983.1 isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 1604, contig_end: 61, database_gene_start: 1, database_gene_end: 1544, hsp/length: 1544/1544, pid: 99.94%, plength: 100.00% AATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAG TCGAACGGTAACAGGAAGCAGCTTGCTGCTTCGCTGACGAGTGGCGGACGGGTGAGTAAT GTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTGGCTAATACCGCATA @@ -25,7 +25,7 @@ CCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTA GCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAAC AAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCT ->gyrA isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 4317, contig_end: 1681, database_gene_start: 1, database_gene_end: 2637, hsp/length: 2637/2637, pid: 99.96%, plength: 100.00% +>gyrA_1_MH933946.1 isolate: 16S-rc_gyrA-rc_beta-lactam.fsa, contig: 16S_rrsD, contig_start: 4317, contig_end: 1681, database_gene_start: 1, database_gene_end: 2637, hsp/length: 2637/2637, pid: 99.96%, plength: 100.00% ATGAGCGACCTTGCGAGAGAAATTACACCGGTCAACATTGAGGAAGAGCTGAAAAGCTCC TATCTGGATTATGCGATGTCGGTCATTGTTGGCCGTGCGCTGCCGGATGTCCGAGATGGC CTGAAGCCGGTACACCGTCGCGTACTTTACGCCATGAACGTATTGGGCAATGACTGGAAC |