| Previous changeset 4:5814c9ffbdef (2023-05-15) |
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Commit message:
planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit f7df6238cbaa188a138cb48217658b6c7b22a181 |
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modified:
sbol_converter.xml |
| b |
| diff -r 5814c9ffbdef -r 35be791462c2 sbol_converter.xml --- a/sbol_converter.xml Mon May 15 07:39:16 2023 +0000 +++ b/sbol_converter.xml Mon Jun 05 09:31:26 2023 +0000 |
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| @@ -10,22 +10,22 @@ <command detect_errors="exit_code"><![CDATA[ #if str($convert_type.type) == "SBOL2 to SBOL3" ln -sv '$sbol2_input' 'input.$sbol2_input.ext' && - sbol2to3 -o '$output' 'input.$sbol2_input.ext' + sbol2-to-sbol3 -o '$output' 'input.$sbol2_input.ext' #elif str($convert_type.type) == "SBOL3 to SBOL2" ln -sv '$sbol3_input' 'input.$sbol3_input.ext' && - sbol3to2 -o '$output' 'input.$sbol3_input.ext' + sbol3-to-sbol2 -o '$output' 'input.$sbol3_input.ext' #elif str($convert_type.type) == "SBOL3 to GENBANK" ln -sv '$sbol3_input' 'input.$sbol3_input.ext' && - sbol2genbank -o '$output' 'input.$sbol3_input.ext' + sbol-to-genbank -o '$output' 'input.$sbol3_input.ext' #elif str($convert_type.type) == "GENBANK to SBOL3" ln -sv '$genbank_input' 'input.$genbank_input.ext' && - genbank2sbol -o '$output' 'input.$genbank_input.ext' --namespace '$convert_type.namespace' + genbank-to-sbol -o '$output' 'input.$genbank_input.ext' --namespace '$convert_type.namespace' #elif str($convert_type.type) == "SBOL3 to FASTA" ln -sv '$sbol3_input' 'input.$sbol3_input.ext' && - sbol2fasta -o '$output' 'input.$sbol3_input.ext' + sbol-to-fasta -o '$output' 'input.$sbol3_input.ext' #elif str($convert_type.type) == "FASTA to SBOL3" ln -sv '$fasta_input' 'input.$fasta_input.ext' && - fasta2sbol -o '$output' 'input.$fasta_input.ext' --namespace '$convert_type.namespace' + fasta-to-sbol -o '$output' 'input.$fasta_input.ext' --namespace '$convert_type.namespace' #elif str($convert_type.type) == "SBOL2 to FASTA" ln -sv '$sbol2_input' 'input.$sbol2_input.ext' && sbol-converter SBOL2 FASTA -o '$output' 'input.$sbol2_input.ext' |