| Previous changeset 0:5e0a39c5bcf6 (2017-03-30) Next changeset 2:f23f7178fae6 (2017-11-02) |
|
Commit message:
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 07491a9ed4870989c9a603b27a4b89173832700f |
|
modified:
hicPlotTADs.xml macros.xml test-data/Li_et_al_2015.h5 test-data/hicBuildMatrix_result1.h5 test-data/hicCorrectMatrix_result1.npz.h5 test-data/hicPlotDistVsCounts_result1.png test-data/hicSumMatrices_result1.npz.h5 test-data/small_test_matrix_50kb_res.h5 |
|
added:
test-data/hicPlotDistVsCounts_result1_.png test-data/hicPlotDistVsCounts_result2.png |
|
removed:
involucro |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 hicPlotTADs.xml --- a/hicPlotTADs.xml Thu Mar 30 02:59:24 2017 -0400 +++ b/hicPlotTADs.xml Mon Apr 03 08:16:45 2017 -0400 |
| [ |
| @@ -31,8 +31,12 @@ #if $x_axis.x_axis_select == "yes": [x-axis] +#if $x_axis.fontsize: fontsize = $x_axis.fontsize +#end if +#if $x_axis.where: where = $x_axis.where +#end if #else: [x-axis] #end if @@ -54,6 +58,10 @@ color = $track.color #end if +#if $track.border_color: +color = $track.border_color +#end if + #if $track.depth: depth = $track.depth #end if @@ -62,8 +70,6 @@ display = $track.display #end if -##color = black - #if $track.width width = $track.width #end if @@ -166,6 +172,7 @@ <param name="title" type="text" optional="true" label="Plot title"/> <expand macro="colormap" /> <param name="color" type="color" value="#000000" label="Track color" optional="True" /> + <param name="border_color" type="color" value="#000000" label="Border color" optional="True" /> <param name="min_value" type="float" value="" optional="True" label="Minimum value"/> <param name="max_value" type="float" value="" optional="True" label="Maximum value"/> @@ -205,6 +212,7 @@ <param name="type" type="select" optional="True" label="Plotting type"> <option value="lines">Lines</option> + <option value="line">Line</option> <option value="vlines">vertical dotted lines from the top to the bottom</option> <option value="arcplot">arcplot</option> <option value="interaction">interaction</option> |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 involucro |
| b |
| Binary file involucro has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 macros.xml --- a/macros.xml Thu Mar 30 02:59:24 2017 -0400 +++ b/macros.xml Mon Apr 03 08:16:45 2017 -0400 |
| b |
| @@ -11,7 +11,7 @@ </xml> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">1.7.1</token> + <token name="@WRAPPER_VERSION@">1.7.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="2.7.13">python</requirement> |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/Li_et_al_2015.h5 |
| b |
| Binary file test-data/Li_et_al_2015.h5 has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicBuildMatrix_result1.h5 |
| b |
| Binary file test-data/hicBuildMatrix_result1.h5 has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicCorrectMatrix_result1.npz.h5 |
| b |
| Binary file test-data/hicCorrectMatrix_result1.npz.h5 has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicPlotDistVsCounts_result1.png |
| b |
| Binary file test-data/hicPlotDistVsCounts_result1.png has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicPlotDistVsCounts_result1_.png |
| b |
| Binary file test-data/hicPlotDistVsCounts_result1_.png has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicPlotDistVsCounts_result2.png |
| b |
| Binary file test-data/hicPlotDistVsCounts_result2.png has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/hicSumMatrices_result1.npz.h5 |
| b |
| Binary file test-data/hicSumMatrices_result1.npz.h5 has changed |
| b |
| diff -r 5e0a39c5bcf6 -r 3615a7c5c119 test-data/small_test_matrix_50kb_res.h5 |
| b |
| Binary file test-data/small_test_matrix_50kb_res.h5 has changed |
