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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 3645871df985 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 01 03:15:22 2016 -0400 |
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| @@ -0,0 +1,42 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="subread" version="1.4.6p5"> + <install version="1.0"> + <actions> + <action type="download_by_url" + sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action> + <action type="shell_command"><![CDATA[ + cd src/ && make -f Makefile.Linux + ]]></action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/utilities</environment_variable> + </action> + </actions> + </install> + <readme> + Downloads and installs the Subread package containing: + - exactSNP + - featureCounts + - subindel + - subjunc + - subread-align + - subread-buildindex + + with the corresponding utilities: + * coverageCount + * globalReassembly + * propmapped + * qualityScores + * removeDup + * subread-fullscan + * subtools + + http://subread.sourceforge.net/ + </readme> + </package> +</tool_dependency> |