| Previous changeset 6:5bec28269d95 (2022-02-12) Next changeset 8:5f625c63b8bc (2022-10-25) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm commit e11987ed5bffa0f2aa60d28acfb9301ac87d4dc4 |
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modified:
hifiasm.xml |
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| diff -r 5bec28269d95 -r 366a11d316a7 hifiasm.xml --- a/hifiasm.xml Sat Feb 12 17:15:48 2022 +0000 +++ b/hifiasm.xml Tue May 31 14:15:45 2022 +0000 |
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| @@ -2,7 +2,7 @@ <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description> <macros> <token name="@TOOL_VERSION@">0.16.1</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token> <xml name="reads"> <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" /> @@ -278,6 +278,9 @@ <data name="hic_balanced_contig_hap2_graph" format="gfa1" from_work_dir="output.hic.hap2.p_ctg.gfa" label="${tool.name} ${on_string}: Hi-C hap2 balanced contig graph hap2"> <filter>mode['mode_selector'] == 'standard' and hic_partition['hic_partition_selector'] == 'set'</filter> </data> + <data name="hic_raw_initig" format="gfa1" from_work_dir="output.hic.r_utg.gfa" label="${tool.name} ${on_string}: Hi-C raw unitig"> + <filter>mode['mode_selector'] == 'standard' and hic_partition['hic_partition_selector'] == 'set'</filter> + </data> <!--Trio outputs with Hi-c reads--> <data name="hap1_contigs_hic" format="gfa1" from_work_dir="output.hic.bench.r_utg.gfa" label="${tool.name} on ${on_string}: raw initig graph"> <filter>mode['mode_selector'] == 'trio' and hic_partition['hic_partition_selector'] == 'set'</filter> @@ -338,7 +341,7 @@ </output> </test> <!--Test Hi-C reads--> - <test expect_num_outputs="4"> + <test expect_num_outputs="5"> <param name="reads" value="hifiasm-in1.fa.gz" ftype="fasta.gz" /> <param name="filter_bits" value="0" /> <param name="mode_selector" value="standard" /> @@ -365,6 +368,12 @@ <has_size value="59529" delta="500"/> </assert_contents> </output> + <output name="hic_raw_initig" ftype="gfa1" > + <assert_contents> + <has_text_matching expression="^S" /> + <has_size value="59522" delta="500"/> + </assert_contents> + </output> </test> <!-- Test trio mode --> <test expect_num_outputs="4"> |