Repository 'srnapipe'
hg clone https://toolshed.g2.bx.psu.edu/repos/brasset_jensen/srnapipe

Changeset 24:36e45a7b3eff (2018-05-13)
Previous changeset 23:6669c4f79cac (2018-05-13) Next changeset 25:e26d3bee9348 (2018-05-13)
Commit message:
Uploaded
modified:
bin/align.pm
b
diff -r 6669c4f79cac -r 36e45a7b3eff bin/align.pm
--- a/bin/align.pm Sun May 13 15:46:36 2018 -0400
+++ b/bin/align.pm Sun May 13 15:53:26 2018 -0400
[
@@ -303,7 +303,8 @@
         } 
         else 
         { 
-          $number{$line[2]}->[2]++ if $seq[9] eq 'A';
+          $number{$line[2]}->[2]++
+          $number{$line[2]}->[4]++ if $seq[9] eq 'A';
         } 
        if ($_ =~ /.*XM:i:(\d+).*/)
        {