| Previous changeset 0:225031d5c818 (2018-04-16) Next changeset 2:bba379e32116 (2019-01-08) |
|
Commit message:
Uploaded |
|
modified:
readseq.xml |
| b |
| diff -r 225031d5c818 -r 36e5445b7807 readseq.xml --- a/readseq.xml Mon Apr 16 08:59:28 2018 -0400 +++ b/readseq.xml Tue Jan 08 10:14:18 2019 -0500 |
| [ |
| @@ -17,7 +17,7 @@ <!-- [REQUIRED] The command to execute --> <command> - readseq $filein -f $format >> $fileout_log 2>&1 && + java -jar /home/galaxy/data/jars/readseq.jar $filein -f $format >> $fileout_log 2>&1 && #if str( $format ) == "1": mv ${filein}.ig $fileout #elif str( $format ) == "2" : @@ -35,7 +35,7 @@ #elif str( $format ) == "11" : mv ${filein}.phylip2 $fileout #elif str( $format ) == "12" : - mv ${filein}.phylip $fileout + perl $__tool_directory__/complete_names.pl ${filein} ${filein}.phylip $fileout #elif str( $format ) == "13" : mv ${filein}.seq $fileout #elif str( $format ) == "14" : |