| Previous changeset 8:ea0a1d50c83f (2020-06-03) Next changeset 10:f522c08e900c (2021-03-12) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 5e4f8567c0145de8c6f9344fe4ee4c3bf2a81e59" |
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modified:
create_mqpar.py mqparam.py test_mqparam.py |
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| diff -r ea0a1d50c83f -r 37d669de2828 create_mqpar.py --- a/create_mqpar.py Wed Jun 03 15:32:53 2020 -0400 +++ b/create_mqpar.py Fri Feb 19 21:24:41 2021 +0000 |
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| @@ -4,8 +4,8 @@ import argparse import os + import yaml - from mqparam import MQParam parser = argparse.ArgumentParser() |
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| diff -r ea0a1d50c83f -r 37d669de2828 mqparam.py --- a/mqparam.py Wed Jun 03 15:32:53 2020 -0400 +++ b/mqparam.py Fri Feb 19 21:24:41 2021 +0000 |
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| @@ -6,11 +6,12 @@ import ntpath import os import re -import yaml import xml.etree.ElementTree as ET from itertools import zip_longest from xml.dom import minidom +import yaml + def et_add_child(el, name, text, attrib=None): "Add a child element to an xml.etree.ElementTree.Element" |
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| diff -r ea0a1d50c83f -r 37d669de2828 test_mqparam.py --- a/test_mqparam.py Wed Jun 03 15:32:53 2020 -0400 +++ b/test_mqparam.py Fri Feb 19 21:24:41 2021 +0000 |
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| @@ -2,8 +2,9 @@ create a new parameter file using '<MAXQUANT_CMD> -c ./mqpar.xml' """ +import xml.etree.ElementTree as ET + import pytest -import xml.etree.ElementTree as ET from mqparam import MQParam, ParamGroup TEMPLATE_PATH = './test-data/template.xml' |