| Previous changeset 4:e96704fc516d (2024-04-25) Next changeset 6:40bcc0e139fa (2024-10-30) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit c7e80dcda727ce63b42aa8a946e9330310929797 |
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modified:
qiime2_core__tools__export.xml |
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| diff -r e96704fc516d -r 37e37518cad1 qiime2_core__tools__export.xml --- a/qiime2_core__tools__export.xml Thu Apr 25 21:28:08 2024 +0000 +++ b/qiime2_core__tools__export.xml Mon Jun 03 23:32:51 2024 +0000 |
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| b'@@ -6,14 +6,14 @@\n -->\n <!--\n This tool was automatically generated by:\n- q2galaxy (version: 2024.2.1)\n+ q2galaxy (version: 2024.5.0)\n for:\n- qiime2 (version: 2024.2.0)\n+ qiime2 (version: 2024.5.0)\n -->\n-<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.2.1+dist.he188c3c2" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.5.0+dist.he540b0b0" profile="22.05" license="BSD-3-Clause">\n <description>Export data from a QIIME 2 artifact</description>\n <requirements>\n- <container type="docker">quay.io/qiime2/amplicon:2024.2</container>\n+ <container type="docker">quay.io/qiime2/amplicon:2024.5</container>\n </requirements>\n <command>q2galaxy run tools export \'$inputs\'</command>\n <configfiles>\n@@ -36,6 +36,7 @@\n <option value="None" selected="true">export as is (no conversion)</option>\n <option value="BLASTDB">BLASTDB</option>\n <option value="Bowtie2Index">Bowtie2Index</option>\n+ <option value="BrackenDB">BrackenDB</option>\n <option value="DeblurStats">DeblurStats</option>\n <option value="DistanceMatrix">DistanceMatrix</option>\n <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>\n@@ -44,18 +45,28 @@\n <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>\n <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>\n <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>\n+ <option value="FeatureData__ob__AlignmentMap__cb__">FeatureData[AlignmentMap]</option>\n <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>\n+ <option value="FeatureData__ob__Contig__cb__">FeatureData[Contig]</option>\n <option value="FeatureData__ob__DecontamScore__cb__">FeatureData[DecontamScore]</option>\n <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option>\n <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>\n <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>\n+ <option value="FeatureData__ob__KEGG__cb__">FeatureData[KEGG]</option>\n+ <option value="FeatureData__ob__Kraken2Output__cb__">FeatureData[Kraken2Output]</option>\n+ <option value="FeatureData__ob__Kraken2Report__cb__">FeatureData[Kraken2Report]</option>\n+ <option value="FeatureData__ob__MAG__cb__">FeatureData[MAG]</option>\n+ <option value="FeatureData__ob__NOG__cb__">FeatureData[NOG]</option>\n+ <option value="FeatureData__ob__OG__cb__">FeatureData[OG]</option>\n <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>\n <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>\n <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>\n <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option>\n <option value="FeatureData__ob__SILVATaxidMap__cb__">FeatureData[SILVATaxidMap]</option>\n <option value="FeatureData__ob__SILVATaxonomy__cb__">FeatureData[SILVATaxonomy]</option>\n+ <option value="FeatureData__ob__SequenceCharacteristics__cb__">FeatureData[SequenceCharacteristics]</option>\n <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option>\n+ <option value="FeatureData__ob__SingleBowtie2Index__cb__">FeatureData[SingleBowtie2Index]</option'..b'- - DeblurStatsDirFmt\n+ - TSVTaxonomyDirectoryFormat\n+ - EggnogProteinSequencesDirFmt\n+ - ImmutableMetadataFormat\n+ - LSMatFormat\n - SingleLanePerSampleSingleEndFastqDirFmt\n - AlignedProteinFASTAFormat\n - PairedDNASequencesDirectoryFormat\n- - UchimeStatsDirFmt\n- - DataLoafPackageDirFmt\n- - ArtificialGroupingFormat\n- - PredictionsDirectoryFormat\n- - SILVATaxonomyDirectoryFormat\n- - DNAFASTAFormat\n- - EMPSingleEndDirFmt\n- - SingleLanePerSamplePairedEndFastqDirFmt\n+ - BooleanSeriesFormat\n+ - MultiplexedPairedEndBarcodeInSequenceDirFmt\n+ - DecontamScoreFormat\n+ - OrthologAnnotationDirFmt\n+ - GenesDirectoryFormat\n+ - MultiBAMDirFmt\n+ - BIOMV210Format\n+ - DecontamScoreDirFmt\n+ - ErrorCorrectionDetailsFmt\n+ - DiamondDatabaseFileFmt\n - AlignedProteinSequencesDirectoryFormat\n - PairedRNASequencesDirectoryFormat\n- - SeppReferenceDirFmt\n- - MAGtoContigsDirFmt\n - DifferentialFormat\n- - UchimeStatsFmt\n- - SILVATaxonomyFormat\n- - FirstDifferencesDirectoryFormat\n+ - Kraken2DBDirectoryFormat\n+ - DADA2StatsFormat\n - DNASequencesDirectoryFormat\n- - GenesDirectoryFormat\n- - EMPPairedEndDirFmt\n+ - ErrorCorrectionDetailsDirFmt\n+ - DiamondDatabaseDirFmt\n+ - ImmutableMetadataDirectoryFormat\n+ - BooleanSeriesDirectoryFormat\n - AlignedDNAFASTAFormat\n- - SILVATaxidMapFormat\n- - ProteinsDirectoryFormat\n- - MultiMAGSequencesDirFmt\n+ - ImportanceFormat\n+ - NewickFormat\n+ - DistanceMatrixDirectoryFormat\n+ - SingleLanePerSamplePairedEndFastqDirFmt\n+ - PlacementsDirFmt\n+ - DeblurStatsFmt\n+ - SILVATaxidMapDirectoryFormat\n - QualityFilterStatsFmt\n - AlignedDNASequencesDirectoryFormat\n- - LSMatFormat\n- - ImmutableMetadataFormat\n- - DeblurStatsFmt\n- - AlphaDiversityFormat\n- - MultiBowtie2IndexDirFmt\n- - ImportanceFormat\n- - FirstDifferencesFormat\n- - DADA2StatsFormat\n- - DistanceMatrixDirectoryFormat\n- - ImmutableMetadataDirectoryFormat\n- - OrdinationFormat\n- - DecontamScoreDirFmt\n- - CasavaOneEightSingleLanePerSampleDirFmt\n+ - ImportanceDirectoryFormat\n+ - NewickDirectoryFormat\n - MultiplexedSingleEndBarcodeInSequenceDirFmt\n- - AlphaDiversityDirectoryFormat\n+ - MultiFASTADirectoryFormat\n+ - ProcrustesStatisticsFmt\n+ - SILVATaxidMapFormat\n+ - UchimeStatsDirFmt\n+ - Kraken2ReportDirectoryFormat\n+ - BLAST6Format\n+ - QualityFilterStatsDirFmt\n+ - ProbabilitiesFormat\n+ - SILVATaxonomyDirectoryFormat\n+ - MultiMAGSequencesDirFmt\n+ - EMPSingleEndDirFmt\n+ - Bowtie2IndexDirFmt\n+ - ProcrustesStatisticsDirFmt\n+ - DeblurStatsDirFmt\n+ - ArtificialGroupingDirectoryFormat\n+ - TaxonomicClassiferTemporaryPickleDirFmt\n+ - LociDirectoryFormat\n+ - ArtificialGroupingFormat\n+ - MAGtoContigsFormat\n+ - BrackenDBDirectoryFormat\n - ProteinFASTAFormat\n - RNAFASTAFormat\n- - ContigSequencesDirFmt\n- - ImportanceDirectoryFormat\n - DADA2StatsDirFmt\n- - NewickFormat\n- - OrdinationDirectoryFormat\n- - TSVTaxonomyDirectoryFormat\n- - BLAST6Format\n- - LociDirectoryFormat\n+ - BLAST6DirectoryFormat\n+ - ProbabilitiesDirectoryFormat\n+ - MultiBowtie2IndexDirFmt\n+ - EMPPairedEndDirFmt\n+ - OrdinationFormat\n+ - SeedOrthologDirFmt\n+ - MAGtoContigsDirFmt\n+ - SampleEstimatorDirFmt\n+ - PlacementsFormat\n - ProteinSequencesDirectoryFormat\n - RNASequencesDirectoryFormat\n- - BIOMV210Format\n- - ProbabilitiesFormat\n- - BLASTDBDirFmtV5\n- - DecontamScoreFormat\n+ - DNAFASTAFormat\n+ - UchimeStatsFmt\n - AlignedRNAFASTAFormat\n- - NewickDirectoryFormat\n- - ProcrustesStatisticsFmt\n- - BLAST6DirectoryFormat\n- - SeedOrthologDirFmt\n- - QIIME1DemuxDirFmt\n- - Bowtie2IndexDirFmt\n+ - TrueTargetsDirectoryFormat\n+ - Kraken2DBReportDirectoryFormat\n+ - KaijuDBDirectoryFormat\n+ - ContigSequencesDirFmt\n+ - FirstDifferencesFormat\n+ - SeppReferenceDirFmt\n+ - OrdinationDirectoryFormat\n+ - PredictionsFormat\n+ - ProteinsDirectoryFormat\n+ - BLASTDBDirFmtV5\n+ - AlignedRNASequencesDirectoryFormat\n+ - SequenceCharacteristicsDirectoryFormat\n+ - AlphaDiversityFormat\n+ - CasavaOneEightSingleLanePerSampleDirFmt\n+ - DifferentialDirectoryFormat\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n' |