Repository 'clair3'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/clair3

Changeset 3:3843a30053ee (2024-09-09)
Previous changeset 2:c8ba8286e7c0 (2024-07-30)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
modified:
clair3.xml
test-data/all_fasta.loc
tool-data/all_fasta.loc.sample
tool_data_table_conf.xml.sample
tool_data_table_conf.xml.test
b
diff -r c8ba8286e7c0 -r 3843a30053ee clair3.xml
--- a/clair3.xml Tue Jul 30 14:23:36 2024 +0000
+++ b/clair3.xml Mon Sep 09 09:10:43 2024 +0000
b
@@ -2,7 +2,7 @@
     <description>germline small variant caller for long-reads</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.8</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <xrefs>
         <xref type='bio.tools'>clair3</xref>
b
diff -r c8ba8286e7c0 -r 3843a30053ee test-data/all_fasta.loc
--- a/test-data/all_fasta.loc Tue Jul 30 14:23:36 2024 +0000
+++ b/test-data/all_fasta.loc Mon Sep 09 09:10:43 2024 +0000
b
@@ -4,7 +4,7 @@
 #all_fasta.loc. This file has the format (white space characters are
 #TAB characters):
 #
-#<unique_build_id> <display_name> <file_path>
+#<unique_build_id> <dbkey> <display_name> <file_path>
 #
 #So, all_fasta.loc could look something like this:
-test1 "Test Genome" ${__HERE__}/test1.fasta
+test1 test1 "Test Genome" ${__HERE__}/test1.fasta
b
diff -r c8ba8286e7c0 -r 3843a30053ee tool-data/all_fasta.loc.sample
--- a/tool-data/all_fasta.loc.sample Tue Jul 30 14:23:36 2024 +0000
+++ b/tool-data/all_fasta.loc.sample Mon Sep 09 09:10:43 2024 +0000
b
@@ -4,7 +4,7 @@
 #all_fasta.loc. This file has the format (white space characters are
 #TAB characters):
 #
-#<unique_build_id> <display_name> <file_path>
+#<unique_build_id> <dbkey> <display_name> <file_path>
 #
 #So, all_fasta.loc could look something like this:
-#test1 Test-Genome ./test-data/test1.fa
+#test1 test1 Test-Genome ./test-data/test1.fa
b
diff -r c8ba8286e7c0 -r 3843a30053ee tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample Tue Jul 30 14:23:36 2024 +0000
+++ b/tool_data_table_conf.xml.sample Mon Sep 09 09:10:43 2024 +0000
b
@@ -6,7 +6,7 @@
         <file path="tool-data/model.loc" />
     </table>
     <table name="all_fasta" comment_char="#">
-        <columns>value, name, path</columns>
+        <columns>value, dbkey, name, path</columns>
         <file path="tool-data/all_fasta.loc" />
     </table>
 </tables>
b
diff -r c8ba8286e7c0 -r 3843a30053ee tool_data_table_conf.xml.test
--- a/tool_data_table_conf.xml.test Tue Jul 30 14:23:36 2024 +0000
+++ b/tool_data_table_conf.xml.test Mon Sep 09 09:10:43 2024 +0000
b
@@ -7,7 +7,7 @@
     </table>
     <!-- Locations of reference genome files in fasta format -->
     <table name="all_fasta" comment_char="#">
-        <columns>value, name, path</columns>
+        <columns>value, dbkey, name, path</columns>
         <file path="${__HERE__}/test-data/all_fasta.loc" />
     </table>
 </tables>