| Previous changeset 1:d734579c3307 (2015-02-24) |
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Commit message:
Uploaded |
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modified:
find_genes_located_nearby.ga find_genes_located_nearby.png repository_dependencies.xml |
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| diff -r d734579c3307 -r 38b08a771e7e find_genes_located_nearby.ga --- a/find_genes_located_nearby.ga Tue Feb 24 08:55:29 2015 -0500 +++ b/find_genes_located_nearby.ga Tue Mar 17 13:34:31 2015 -0400 |
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| @@ -17,8 +17,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 247, - "top": 307 + "left": 248, + "top": 311 }, "tool_errors": null, "tool_id": null, @@ -40,7 +40,7 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 244, + "left": 250, "top": 386 }, "tool_errors": null, @@ -417,7 +417,13 @@ "left": 819.5, "top": 489.5 }, - "post_job_actions": {}, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0", "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c6+10000\\\"\", \"round\": \"\\\"yes\\\"\", \"__page__\": 0}", @@ -484,22 +490,20 @@ } ], "position": { - "left": 1136, - "top": 325 + "left": 1160.9166870117188, + "top": 325.91668701171875 }, "post_job_actions": { - "RenameDatasetActionoutput": { - "action_arguments": { - "newname": "Protein 1 positions nearby Protein 2" - }, - "action_type": "RenameDatasetAction", + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", "output_name": "output" } }, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/0.0.1", - "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"returntype\": \"\\\"\\\"\", \"chromInfo\": \"\\\"/usr/local/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", - "tool_version": "0.0.1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0", + "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"returntype\": \"\\\"\\\"\"}", + "tool_version": "1.0.0", "type": "tool", "user_outputs": [] }, @@ -507,12 +511,41 @@ "annotation": "", "id": 15, "input_connections": { - "input1": { + "input": { "id": 14, "output_name": "output" } }, "inputs": [], + "name": "Sort", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1154.9166870117188, + "top": 458.91668701171875 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "sort1", + "tool_state": "{\"__page__\": 0, \"style\": \"\\\"alpha\\\"\", \"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"__rerun_remap_job_id__\": null, \"order\": \"\\\"DESC\\\"\", \"input\": \"null\", \"column_set\": \"[{\\\"other_order\\\": \\\"DESC\\\", \\\"__index__\\\": 0, \\\"other_column\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}, \\\"other_style\\\": \\\"num\\\"}]\"}", + "tool_version": "1.0.3", + "type": "tool", + "user_outputs": [] + }, + "16": { + "annotation": "", + "id": 16, + "input_connections": { + "input1": { + "id": 15, + "output_name": "out_file1" + } + }, + "inputs": [], "name": "Group", "outputs": [ { @@ -521,8 +554,8 @@ } ], "position": { - "left": 1139.5, - "top": 488 + "left": 1352.5, + "top": 399 }, "post_job_actions": { "RenameDatasetActionout_file1": { @@ -541,5 +574,5 @@ "user_outputs": [] } }, - "uuid": "10f50489-adf1-4257-a971-8a814ef98f6c" -} \ No newline at end of file + "uuid": "12fe8ac4-30db-4db4-b8f9-7c44e0cc0788" +} |
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| diff -r d734579c3307 -r 38b08a771e7e find_genes_located_nearby.png |
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| Binary file find_genes_located_nearby.png has changed |
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| diff -r d734579c3307 -r 38b08a771e7e repository_dependencies.xml --- a/repository_dependencies.xml Tue Feb 24 08:55:29 2015 -0500 +++ b/repository_dependencies.xml Tue Mar 17 13:34:31 2015 -0400 |
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| @@ -1,4 +1,6 @@ <?xml version="1.0"?> <repositories description="This workflow requires the NCBI BLAST tools."> <repository changeset_revision="2fe07f50a41e" name="ncbi_blast_plus" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="77641d5731c8" name="intersect" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="08a01b2ce4cd" name="column_maker" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </repositories> |
