| Previous changeset 10:c0572270b095 (2015-01-21) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
| b |
| diff -r c0572270b095 -r 390843b28bdd tool_dependencies.xml --- a/tool_dependencies.xml Wed Jan 21 17:36:15 2015 -0500 +++ b/tool_dependencies.xml Wed Jan 21 17:41:20 2015 -0500 |
| b |
| @@ -12,8 +12,8 @@ <package name="bamtools" version="2.3.0"> <install version="1.0"> <actions> - - <action type="shell_command">pwd > ~/TEST/whereami0</action> + + <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> @@ -21,27 +21,17 @@ </repository> </action> - <action type="shell_command">pwd > ~/TEST/whereami1</action> - <action type="set_environment_for_install"> <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="samtools" version="0.1.18" /> </repository> - </action> - - <action type="shell_command">pwd > ~/TEST/whereami2</action> - <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action> - <action type="shell_command">pwd > ~/TEST/whereami3</action> + </action> + <action type="shell_command">mkdir build</action> - <action type="shell_command">pwd > ~/TEST/whereami4</action> <action type="change_directory">build</action> - <action type="shell_command">pwd > ~/TEST/whereami5</action> <action type="shell_command">cmake ..</action> - <action type="shell_command">pwd > ~/TEST/whereami6</action> <action type="shell_command">make</action> - <action type="shell_command">pwd > ~/TEST/whereami7</action> <action type="change_directory">..</action> - <action type="shell_command">pwd > ~/TEST/whereami8</action> <action type="move_directory_files"> <source_directory>./</source_directory> |