| Previous changeset 0:9a1729b89405 (2016-05-17) Next changeset 2:0c4267ccfbc1 (2016-06-21) |
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Commit message:
Uploaded |
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modified:
Snmf.pl |
| b |
| diff -r 9a1729b89405 -r 395c7ab476a6 Snmf.pl --- a/Snmf.pl Tue May 17 10:51:34 2016 -0400 +++ b/Snmf.pl Tue Jun 21 19:38:29 2016 -0400 |
| b |
| @@ -35,9 +35,9 @@ my $PLINK_EXE = "plink"; -system("$PLINK_EXE --vcf $input --allow-extra-chr --recode-vcf --out $directory/input >>$directory/plink.log 2>&1"); +system("$PLINK_EXE --vcf $input --allow-extra-chr --recode vcf-fid --out $directory/input >>$directory/logs 2>&1"); -system("vcf2geno $directory/input.vcf $directory/polymorphisms.geno >>$directory/vcf2geno.log 2>&1"); +system("vcf2geno $directory/input.vcf $directory/polymorphisms.geno >>$directory/logs 2>&1"); my $ind_cmd = `grep '#CHROM' $input`; |