Repository 'repeat_masker'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker

Changeset 12:39b40a9a6296 (2021-08-27)
Previous changeset 11:72aade318318 (2021-05-20) Next changeset 13:3f987772e283 (2021-10-21)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 2f2463888c41a99aec46d4da0eb0ac66cbc20889"
modified:
repeatmasker.xml
b
diff -r 72aade318318 -r 39b40a9a6296 repeatmasker.xml
--- a/repeatmasker.xml Thu May 20 12:56:42 2021 +0000
+++ b/repeatmasker.xml Fri Aug 27 09:16:08 2021 +0000
[
@@ -11,7 +11,7 @@
     RM_PATH=\$(which RepeatMasker) &&
     if [ -z "\$RM_PATH" ] ; then echo "Failed to find RepeatMasker in PATH (\$PATH)" >&2 ; exit 1 ; fi &&
 
-    RM_LIB_PATH=\$(dirname \$RM_PATH)/../share/RepeatMasker/Libraries &&
+    if [ -z "\$RM_LIB_PATH" ] ; then RM_LIB_PATH=\$(dirname \$RM_PATH)/../share/RepeatMasker/Libraries ; fi &&
     #if $repeat_source.source_type == "dfam_up":
       mkdir lib/ &&
       ln -s '${repeat_source.dfam_lib}' lib/RepeatMaskerLib.h5 &&