Repository 'coverage_report'
hg clone https://toolshed.g2.bx.psu.edu/repos/geert-vandeweyer/coverage_report

Changeset 3:39c374d4cba7 (2014-02-13)
Previous changeset 2:a9555d172896 (2014-02-13) Next changeset 4:2799221681dd (2014-02-13)
Commit message:
Uploaded
modified:
CoverageReport.pl
b
diff -r a9555d172896 -r 39c374d4cba7 CoverageReport.pl
--- a/CoverageReport.pl Thu Feb 13 04:45:36 2014 -0500
+++ b/CoverageReport.pl Thu Feb 13 04:45:48 2014 -0500
b
@@ -235,13 +235,13 @@
 $avg = $sum/$counter;
 close IN;
 open OUT, ">$wd/Rout/hist.txt";
+if (!defined($dens{'0'})) {
+ $dens{'0'} = 0;
+}
 foreach (keys(%dens)) {
  print OUT "$_;$dens{$_}\n";
 }
 close OUT;
-if (!defined($dens{'0'})) {
- $dens{'0'} = 0;
-}
 open OUT, ">$wd/Rout/ntplot.R";
 # read coverage hist in R to plot
 print OUT 'coverage <- read.table("hist.txt" , as.is = TRUE, header=FALSE,sep=";")'."\n";