| Next changeset 1:51414871fd5b (2016-02-15) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 39f88d354d7d tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Feb 15 03:30:11 2016 -0500 |
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| @@ -0,0 +1,51 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="mgescan" version="3.0.0"> + <install version="1.0"> + <actions_group> + <!-- + <actions architecture="x86_64" os="linux"> + <action type="download_by_url"> + https://github.com/MGEScan/mgescan/archive/1.0.tar.gz + </action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + --> + <actions> + <action type="download_by_url"> + https://github.com/MGEScan/mgescan/archive/1.0.tar.gz + </action> + <action type="set_environment_for_install"> + <repository changeset_revision="a2e1d1f25e35" name="tandem_repeats_finder" owner="urgi-team" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="trf" version="4.0" /> + </repository> + </action> + <action type="shell_command">python setup.py install</action> + <action type="move_file"> + <source>mgescan</source> + <destination>$INSTALL_DIR/mgescan</destination> + </action> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/mgescan</environment_variable> + <environment_variable action="set_to" name="MGESCAN_SRC">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> +Program: mgescan (Tools for identifying LTR & nonLTR) +Version: 3.0 + +Usage: + mgescan both <genome_dir> [--output=<data_dir>] [--mpi=<num>] + mgescan ltr <genome_dir> [--output=<data_dir>] [--mpi=<num>] + mgescan nonltr <genome_dir> [--output=<data_dir>] [--mpi=<num>] + mgescan (-h | --help) + mgescan --version + + </readme> + </package> +</tool_dependency> |