| Previous changeset 30:b50965edac24 (2017-03-09) Next changeset 32:7c33029fd63d (2017-03-28) |
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Commit message:
Uploaded |
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modified:
imgt_loader/imgt_loader.r |
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removed:
report_clonality/circos/fonts.conf~ report_clonality/circos/housekeeping.conf~ |
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| diff -r b50965edac24 -r 3a76faa53c59 imgt_loader/imgt_loader.r --- a/imgt_loader/imgt_loader.r Thu Mar 09 10:48:14 2017 -0500 +++ b/imgt_loader/imgt_loader.r Tue Mar 14 06:51:38 2017 -0400 |
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| @@ -31,10 +31,12 @@ out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"] out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"] -out[,"CDR3.Seq"] = aa[,"CDR3.IMGT"] +out[,"CDR3.Seq"] = gapped.aa[,"CDR3.IMGT"] out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"] -out[,"CDR3.Seq.DNA"] = gapped.aa[,"CDR3.IMGT"] +out[,"CDR3.IMGT"] = out[,"CDR3.Seq"] + +out[,"CDR3.Seq.DNA"] = sequences[,"CDR3.IMGT"] out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"])) out[,"Strand"] = summ[,"Orientation"] out[,"CDR3.Found.How"] = "a" |
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| diff -r b50965edac24 -r 3a76faa53c59 report_clonality/circos/fonts.conf~ --- a/report_clonality/circos/fonts.conf~ Thu Mar 09 10:48:14 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,8 +0,0 @@ - -default = LTe50046.ttf -normal = LTe50046.ttf -bold = LTe50048.ttf -condensed = LTe50050.ttf -condensedbold = LTe50054.ttf -mono = pragmata.ttf -glyph = wingding.ttf |