| Previous changeset 59:5ad68d3a11cc (2016-08-27) Next changeset 61:0b4450bdc6a9 (2016-08-27) |
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Commit message:
Uploaded |
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modified:
SAINT_preprocessing.xml |
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| diff -r 5ad68d3a11cc -r 3c0ed536029e SAINT_preprocessing.xml --- a/SAINT_preprocessing.xml Sat Aug 27 21:13:21 2016 -0400 +++ b/SAINT_preprocessing.xml Sat Aug 27 21:29:26 2016 -0400 |
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| @@ -1,7 +1,7 @@ <tool id="SAINT_preprocessing_v5" name="SAINT pre-processing"> <description></description> <command interpreter="python"> - #if (str($type) == 'Scaffold'): + #if (str($type_select.type) == 'Scaffold'): SAINT_preprocessing.py $input $preybool $fasta_db $Inter_file $Prey_file " #for $ba in $bait @@ -11,7 +11,7 @@ #end for " $Bait_file \$INSTALL_RUN_PATH/ $bait_bool $bait_file_in - #elif (str($type) == 'MaxQuant'): + #elif (str($type_select.type) == 'MaxQuant'): SAINT_preprocessing_mq_pep.py $input $preybool $fasta_db $Inter_file $Prey_file " #for $ba in $bait @@ -21,7 +21,7 @@ #end for " $Bait_file \$INSTALL_RUN_PATH/ $bait_bool $bait_file_in - #elif (str($type) == 'Peptideshaker'): + #elif (str($type_select.type) == 'Peptideshaker'): Protein_report_processing.py "$input" $Bait_file $use_metric $fasta_db $preybool " #for $ba in $bait @@ -38,7 +38,7 @@ </requirements> <inputs> <conditional name="type_select"> - <param type="select" name="type" label="MaxQuant or Scaffold"> + <param type="select" name="type" label="Data Source"> <option value="MaxQuant">MaxQuant</option> <option value="Scaffold">Scaffold</option> <option value="Peptideshaker">Peptideshaker</option> |