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GRsetFromGEO/GRsetFromGEO.xml |
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| diff -r 7511130b5068 -r 3cd5fb747251 GRsetFromGEO/GRsetFromGEO.xml --- a/GRsetFromGEO/GRsetFromGEO.xml Sun Jun 11 07:49:41 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.xml Sun Jun 11 08:00:36 2017 -0400 |
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| @@ -1,10 +1,10 @@ <?xml version="1.0" encoding="UTF-8"?> <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2"> - <requirements> - <requirement type="package" version="1.20.0">bioconductor-minfi</requirement> - </requirements> +<requirements> +<requirement type="package" version="1.20.0">bioconductor-minfi</requirement> +</requirements> <stdio> - <exit_code range="1:" /> +<exit_code range="1:" /> </stdio> <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> <inputs> @@ -26,14 +26,14 @@ </test> </tests> <help> - **What it does** - This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object - **Input** - The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" - **Output** - GenomicRatioSet object +**What it does** +This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object +**Input** +The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" +**Output** +GenomicRatioSet object </help> <citations> - <citation type="doi">10.1093/bioinformatics/btu049</citation> +<citation type="doi">10.1093/bioinformatics/btu049</citation> </citations> </tool> |