| Previous changeset 0:6ddfa9d9653b (2017-04-12) Next changeset 2:3021b9f5809f (2019-11-28) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit b3426aed6615742d96dfb8f7346a9e0d4e391a99 |
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modified:
macros.xml obiannotate.xml test-data/output_obiclean_advanced.fasta test-data/output_obiconvert.fasta test-data/output_obisort.fasta test-data/output_obisort.fastq test-data/output_obistat.txt test-data/output_obitab.txt test-data/output_obiuniq.fasta |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 macros.xml --- a/macros.xml Wed Apr 12 17:37:37 2017 -0400 +++ b/macros.xml Fri Oct 12 06:26:12 2018 -0400 |
| b |
| @@ -2,11 +2,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.010">obitools</requirement> + <requirement type="package" version="@TOOL_VERSION@">obitools</requirement> </requirements> </xml> - <token name="@WRAPPER_VERSION@">1.0.010</token> + <token name="@TOOL_VERSION@">1.2.11</token> <xml name="stdio"> <stdio> |
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| diff -r 6ddfa9d9653b -r 3d21aa00d575 obiannotate.xml --- a/obiannotate.xml Wed Apr 12 17:37:37 2017 -0400 +++ b/obiannotate.xml Fri Oct 12 06:26:12 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="obi_annotate" name="obiannotate" version="@WRAPPER_VERSION@"> +<tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@"> <description>Adds/Edits sequence record annotations</description> <macros> <import>macros.xml</import> |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obiclean_advanced.fasta --- a/test-data/output_obiclean_advanced.fasta Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obiclean_advanced.fasta Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b"@@ -1,172 +1,172 @@\n->HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaagtaattattataacaaaatcattcgccagagtactaccggcaat\n agctcaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaag\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_internalcount=0; obiclean_singletoncount=0; count=61; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_internalcount=0; obiclean_singletoncount=0; count=61; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_status={'29a_F260619': 'h', '15a_F730814': 'h'}; obiclean_head=True; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 64}; obiclean_internalcount=0; obiclean_singletoncount=0; count=64; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 64}; obiclean_internalcount=0; obiclean_singletoncount=0; count=64; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'h'}; obiclean_head=True; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 3}; obiclean_internalcount=0; obiclean_singletoncount=1; count=3; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 3}; obiclean_internalcount=0; obiclean_singletoncount=1; count=3; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaaataattacacaaacaaaattgttcaccagagtactagcggcaac\n agcttaaaactcaaagg"..b"ttcgccagagtagtactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=99; obiclean_headcount=0; seq_rank=53; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=99; obiclean_headcount=0; seq_rank=53; obiclean_samplecount=1; obiclean_status={'26a_F040644': 's'}; obiclean_head=True; \n ttagccctaaacatagataattttacaacaaaataattcgccagaggactactagcaata\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP merged_sample={'15a_F730814': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=54; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP merged_sample={'15a_F730814': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=54; obiclean_samplecount=1; obiclean_status={'15a_F730814': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactgccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=99; obiclean_headcount=0; seq_rank=55; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=99; obiclean_headcount=0; seq_rank=55; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'i'}; obiclean_head=False; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactacgagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB merged_sample={'15a_F730814': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=100; obiclean_headcount=0; seq_rank=56; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB merged_sample={'15a_F730814': 1}; obiclean_internalcount=0; obiclean_singletoncount=1; count=1; seq_length=100; obiclean_headcount=0; seq_rank=56; obiclean_samplecount=1; obiclean_status={'15a_F730814': 's'}; obiclean_head=True; \n ttagccctaaacacaagacattaatataacgagattaatcgacagagtactaccggctat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB merged_sample={'13a_F730603': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=57; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB merged_sample={'13a_F730603': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=100; obiclean_headcount=0; seq_rank=57; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'i'}; obiclean_head=False; \n ctagccttaaacacaaatagttatgcagacaaaactattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=99; obiclean_headcount=0; seq_rank=58; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP merged_sample={'26a_F040644': 1}; obiclean_internalcount=1; obiclean_singletoncount=0; count=1; seq_length=99; obiclean_headcount=0; seq_rank=58; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'i'}; obiclean_head=False; \n ttagccctaaacatgaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n" |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obiconvert.fasta --- a/test-data/output_obiconvert.fasta Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obiconvert.fasta Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b"@@ -1,172 +1,172 @@\n->HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n TTAGCCCTAAACACAAGTAATTATTATAACAAAATCATTCGCCAGAGTACTACCGGCAAT\n AGCTCAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n TTAGCCCTAAACACAAGTAATTAATATAACAAAATTGTTCGCCAGAGTACTACCGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n TTAGCCCTAAACACAAGTAATTAATATAACAAAATTATTCGCCAGAGTACTACCGGCAAG\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=9; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=9; obiclean_samplecount=1; obiclean_status={'15a_F730814': 'i'}; obiclean_head=False; \n TTAGCCCTAAACACAAGTAATTAATATAACAAAATTATTCGCCAGAGTACTACCGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATCCCCTT\n->HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=10; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=10; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'i'}; obiclean_head=False; \n CTAGCCTTAAACACAAATAGTTATGCAAACAAAACTATTCGCCAGAGTACTACAGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=11; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=11; obiclean_samplecount=1; obiclean_status={'26a_F040644': 's'}; obiclean_head=True; \n TTAGCCCTAAACATAAACATTCAATAAACAAGAATGTTCGCCAGAGGACTACTAGCAATA\n GCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCT\n->HELIUM_000100422_612GNAAXX:7:38:6201"..b"}; obiclean_head=False; \n TTAGCCCTAAACATAAACATTCAATAAACAAGAATGTTTGCCAGAGTACTACTAGCAACA\n GCCTGAAACTCAAAGGACTTGGCGGTGCTTTACATCCCT\n->HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB count=2; merged_sample={'15a_F730814': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=20; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB count=2; merged_sample={'15a_F730814': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=20; obiclean_samplecount=1; obiclean_status={'15a_F730814': 's'}; obiclean_head=True; \n TTAGCCCTAAACACAAGTAATTAATATAACAAAATTATTCGCCAGAGTACTACCGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCTTT\n->HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n TTAGCCCTAAACACAAATAATTACACAAACAAAATTGTTCACCAGAGTACTAGCGGCAAC\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n TTTT\n->HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'h'}; obiclean_head=True; \n CTAGCCTTAAACACAAATAGTTATGCAAACAAAACTATTCGCCAGAGTACTACCGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_status={'29a_F260619': 'h', '15a_F730814': 'h'}; obiclean_head=True; \n TTAGCCCTAAACACAAGTAATTAATATAACAAAATTATTCGCCAGAGTACTACCGGCAAT\n AGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCTT\n->HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'h'}; obiclean_head=True; \n TTAGCCCTAAACATAAACATTCAATAAACAAGAATGTTCGCCAGAGTACTACTAGCAACA\n GCCTGAAACTCAAAGGACTTGGCGGTGCTTTACATCCCT\n" |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obisort.fasta --- a/test-data/output_obisort.fasta Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obisort.fasta Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b"@@ -1,172 +1,172 @@\n->HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=1; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaagtaattattataacaaaatcattcgccagagtactaccggcaat\n agctcaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=2; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'29a_F260619': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=3; obiclean_samplecount=1; obiclean_status={'29a_F260619': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaag\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=9; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=9; obiclean_samplecount=1; obiclean_status={'15a_F730814': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttatcccctt\n->HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=10; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=10; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'i'}; obiclean_head=False; \n ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactacaggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=11; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=11; obiclean_samplecount=1; obiclean_status={'26a_F040644': 's'}; obiclean_head=True; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagaggactactagcaata\n gcttaaaactcaaaggacttggcggtgctttatatccct\n->HELIUM_000100422_612GNAAXX:7:38:6201"..b"}; obiclean_head=False; \n ttagccctaaacataaacattcaataaacaagaatgtttgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB count=2; merged_sample={'15a_F730814': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=20; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB count=2; merged_sample={'15a_F730814': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=20; obiclean_samplecount=1; obiclean_status={'15a_F730814': 's'}; obiclean_head=True; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccttt\n->HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaaataattacacaaacaaaattgttcaccagagtactagcggcaac\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n tttt\n->HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'h'}; obiclean_head=True; \n ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_status={'29a_F260619': 'h', '15a_F730814': 'h'}; obiclean_head=True; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'h'}; obiclean_head=True; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n" |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obisort.fastq --- a/test-data/output_obisort.fastq Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obisort.fastq Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b"@@ -1,172 +1,172 @@\n->HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP count=64; merged_sample={'26a_F040644': 64}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=99; obiclean_headcount=1; seq_rank=5; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'h'}; obiclean_head=True; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB count=61; merged_sample={'29a_F260619': 30, '15a_F730814': 31}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=2; seq_rank=4; obiclean_samplecount=2; obiclean_status={'29a_F260619': 'h', '15a_F730814': 'h'}; obiclean_head=True; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB count=46; merged_sample={'13a_F730603': 46}; obiclean_singletoncount=0; obiclean_internalcount=0; seq_length=100; obiclean_headcount=1; seq_rank=8; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'h'}; obiclean_head=True; \n ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB count=7; merged_sample={'29a_F260619': 7}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=4; obiclean_headcount=0; seq_rank=16; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n tttt\n->HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP count=3; merged_sample={'29a_F260619': 3}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=6; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaaataattacacaaacaaaattgttcaccagagtactagcggcaac\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB count=2; merged_sample={'29a_F260619': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=7; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB count=2; merged_sample={'29a_F260619': 2}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=7; obiclean_samplecount=1; obiclean_status={'29a_F260619': 's'}; obiclean_head=True; \n ttagccctaaacacaagtaattattataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:115:17402:4174#0/2_CONS_SUB_SUB_CMP count=2; merged_sample={'29a_F260619': 1,"..b"ttcgccagagtagtactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=53; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=99; obiclean_headcount=0; seq_rank=53; obiclean_samplecount=1; obiclean_status={'26a_F040644': 's'}; obiclean_head=True; \n ttagccctaaacatagataattttacaacaaaataattcgccagaggactactagcaata\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=54; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=54; obiclean_samplecount=1; obiclean_status={'15a_F730814': 'i'}; obiclean_head=False; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactgccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=99; obiclean_headcount=0; seq_rank=55; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=99; obiclean_headcount=0; seq_rank=55; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'i'}; obiclean_head=False; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactacgagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=56; obiclean_samplecount=1; obiclean_head=True; \n+>HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB count=1; merged_sample={'15a_F730814': 1}; obiclean_singletoncount=1; obiclean_internalcount=0; seq_length=100; obiclean_headcount=0; seq_rank=56; obiclean_samplecount=1; obiclean_status={'15a_F730814': 's'}; obiclean_head=True; \n ttagccctaaacacaagacattaatataacgagattaatcgacagagtactaccggctat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=57; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB count=1; merged_sample={'13a_F730603': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=100; obiclean_headcount=0; seq_rank=57; obiclean_samplecount=1; obiclean_status={'13a_F730603': 'i'}; obiclean_head=False; \n ctagccttaaacacaaatagttatgcagacaaaactattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=99; obiclean_headcount=0; seq_rank=58; obiclean_samplecount=1; obiclean_head=False; \n+>HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP count=1; merged_sample={'26a_F040644': 1}; obiclean_singletoncount=0; obiclean_internalcount=1; seq_length=99; obiclean_headcount=0; seq_rank=58; obiclean_samplecount=1; obiclean_status={'26a_F040644': 'i'}; obiclean_head=False; \n ttagccctaaacatgaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n" |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obistat.txt --- a/test-data/output_obistat.txt Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obistat.txt Fri Oct 12 06:26:12 2018 -0400 |
| b |
| @@ -1,8 +1,8 @@ count merged min_seq_length count total +46 None 100 1 46 +61 None 100 1 61 2 None 99 4 8 -61 None 100 1 61 -46 None 100 1 46 +3 None 100 1 3 +1 None 5 49 49 7 None 4 1 7 64 None 99 1 64 -1 None 5 49 49 -3 None 100 1 3 |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obitab.txt --- a/test-data/output_obitab.txt Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obitab.txt Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b'@@ -1,59 +1,59 @@\n-id\tcount\tsample:13a_F730603\tsample:15a_F730814\tsample:26a_F040644\tsample:29a_F260619\tobiclean_head\tobiclean_headcount\tobiclean_internalcount\tobiclean_samplecount\tobiclean_singletoncount\tseq_length\tseq_rank\n-HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP\t64\t0\t0\t64\t0\tTrue\t1\t0\t1\t0\t99\t5\n-HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB\t61\t0\t31\t0\t30\tTrue\t2\t0\t2\t0\t100\t4\n-HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB\t46\t46\t0\t0\t0\tTrue\t1\t0\t1\t0\t100\t8\n-HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB\t7\t0\t0\t0\t7\tTrue\t0\t0\t1\t1\t4\t16\n-HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP\t3\t0\t0\t0\t3\tTrue\t0\t0\t1\t1\t100\t6\n-HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB\t2\t0\t0\t0\t2\tTrue\t0\t0\t1\t1\t100\t7\n-HELIUM_000100422_612GNAAXX:7:115:17402:4174#0/2_CONS_SUB_SUB_CMP\t2\t0\t1\t0\t1\tFalse\t0\t2\t2\t0\t100\t13\n-HELIUM_000100422_612GNAAXX:7:38:10813:16867#0/2_CONS_SUB_SUB\t2\t0\t0\t2\t0\tFalse\t0\t1\t1\t0\t99\t15\n-HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB\t2\t0\t2\t0\t0\tTrue\t0\t0\t1\t1\t100\t20\n-HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tTrue\t0\t0\t1\t1\t100\t1\n-HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\t100\t2\n-HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\t100\t3\n-HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\t100\t9\n-HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\t100\t10\n-HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t11\n-HELIUM_000100422_612GNAAXX:7:38:6201:12003#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t12\n-HELIUM_000100422_612GNAAXX:7:78:7151:19928#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t14\n-HELIUM_000100422_612GNAAXX:7:16:16357:19948#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\t99\t17\n-HELIUM_000100422_612GNAAXX:7:107:3570:18147#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\t100\t18\n-HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tTrue\t0\t0\t1\t1\t100\t19\n-HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tTrue\t0\t0\t1\t1\t100\t21\n-HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\t100\t22\n-HELIUM_000100422_612GNAAXX:7:76:10822:18722#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\t99\t23\n-HELIUM_000100422_612GNAAXX:7:76:8491:8900#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\t100\t24\n-HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\t100\t25\n-HELIUM_000100422_612GNAAXX:7:59:11971:12063#0/2_CONS_SUB_SUB\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\t100\t26\n-HELIUM_000100422_612GNAAXX:7:111:19168:18517#0/2_CONS_SUB_SUB\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\t100\t27\n-HELIUM_000100422_612GNAAXX:7:41:9316:2256#0/2_CONS_SUB_SUB\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\t100\t28\n-HELIUM_000100422_612GNAAXX:7:33:9900:9541#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\t100\t29\n-HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t30\n-HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\t100\t31\n-HELIUM_000100422_612GNAAXX:7:19:6313:16567#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\t99\t32\n-HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t33\n-HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\t99\t34\n-HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\t100\t35\n-HELIUM_000100422_612GNAAXX:7:89:9710:20652#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\t99\t36\n-HELIUM_000100422_612GNAAXX:7:71:17473:7401#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\t100\t37\n-HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\t5\t38\n-HELIUM_000100422_612GNAAXX:7:99:8183:13912#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\t100\t39\n-HELIUM_000100422_612GNAAXX:7:22:1798:3790#0/2_CONS_SUB_SUB_CMP\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\t100\t40\n-HELIUM_000100422_612GNAAXX:7:115:14354:1'..b'\t1\tNA\tNA\tNA\ts\t100\t19\n+HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tTrue\t0\t0\t1\t1\tNA\tNA\tNA\ts\t100\t21\n+HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\tNA\ts\tNA\tNA\t100\t22\n+HELIUM_000100422_612GNAAXX:7:76:10822:18722#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t23\n+HELIUM_000100422_612GNAAXX:7:76:8491:8900#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\tNA\ts\tNA\tNA\t100\t24\n+HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\ts\tNA\tNA\tNA\t100\t25\n+HELIUM_000100422_612GNAAXX:7:59:11971:12063#0/2_CONS_SUB_SUB\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\tNA\tNA\tNA\ti\t100\t26\n+HELIUM_000100422_612GNAAXX:7:111:19168:18517#0/2_CONS_SUB_SUB\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\tNA\ti\tNA\tNA\t100\t27\n+HELIUM_000100422_612GNAAXX:7:41:9316:2256#0/2_CONS_SUB_SUB\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\tNA\tNA\tNA\ti\t100\t28\n+HELIUM_000100422_612GNAAXX:7:33:9900:9541#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\ti\tNA\tNA\tNA\t100\t29\n+HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\tNA\tNA\ts\tNA\t99\t30\n+HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\ts\tNA\tNA\tNA\t100\t31\n+HELIUM_000100422_612GNAAXX:7:19:6313:16567#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t32\n+HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\tNA\tNA\ts\tNA\t99\t33\n+HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\tNA\tNA\ts\tNA\t99\t34\n+HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\tNA\ts\tNA\tNA\t100\t35\n+HELIUM_000100422_612GNAAXX:7:89:9710:20652#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t36\n+HELIUM_000100422_612GNAAXX:7:71:17473:7401#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\tNA\ti\tNA\tNA\t100\t37\n+HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tTrue\t0\t0\t1\t1\ts\tNA\tNA\tNA\t5\t38\n+HELIUM_000100422_612GNAAXX:7:99:8183:13912#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\ti\tNA\tNA\tNA\t100\t39\n+HELIUM_000100422_612GNAAXX:7:22:1798:3790#0/2_CONS_SUB_SUB_CMP\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\ti\tNA\tNA\tNA\t100\t40\n+HELIUM_000100422_612GNAAXX:7:115:14354:10118#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t41\n+HELIUM_000100422_612GNAAXX:7:103:3594:15996#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\ti\tNA\tNA\tNA\t100\t42\n+HELIUM_000100422_612GNAAXX:7:105:14135:6905#0/2_CONS_SUB_SUB\t1\t0\t0\t0\t1\tTrue\t0\t0\t1\t1\tNA\tNA\tNA\ts\t100\t43\n+HELIUM_000100422_612GNAAXX:7:76:18268:14980#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\tNA\tNA\tNA\ti\t100\t44\n+HELIUM_000100422_612GNAAXX:7:25:7789:3090#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\tNA\tNA\tNA\ti\t100\t45\n+HELIUM_000100422_612GNAAXX:7:42:19757:3800#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\tNA\ti\tNA\tNA\t99\t46\n+HELIUM_000100422_612GNAAXX:7:116:14244:17926#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t47\n+HELIUM_000100422_612GNAAXX:7:72:12959:5736#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t48\n+HELIUM_000100422_612GNAAXX:7:7:15538:8325#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\tNA\tNA\ts\tNA\t99\t49\n+HELIUM_000100422_612GNAAXX:7:120:16005:7955#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t98\t50\n+HELIUM_000100422_612GNAAXX:7:10:9237:10532#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t0\t1\tFalse\t0\t1\t1\t0\tNA\tNA\tNA\ti\t100\t51\n+HELIUM_000100422_612GNAAXX:7:7:11998:4462#0/2_CONS_SUB_SUB\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t52\n+HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tTrue\t0\t0\t1\t1\tNA\tNA\ts\tNA\t99\t53\n+HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP\t1\t0\t1\t0\t0\tFalse\t0\t1\t1\t0\tNA\ti\tNA\tNA\t100\t54\n+HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t55\n+HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB\t1\t0\t1\t0\t0\tTrue\t0\t0\t1\t1\tNA\ts\tNA\tNA\t100\t56\n+HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB\t1\t1\t0\t0\t0\tFalse\t0\t1\t1\t0\ti\tNA\tNA\tNA\t100\t57\n+HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP\t1\t0\t0\t1\t0\tFalse\t0\t1\t1\t0\tNA\tNA\ti\tNA\t99\t58\n' |
| b |
| diff -r 6ddfa9d9653b -r 3d21aa00d575 test-data/output_obiuniq.fasta --- a/test-data/output_obiuniq.fasta Wed Apr 12 17:37:37 2017 -0400 +++ b/test-data/output_obiuniq.fasta Fri Oct 12 06:26:12 2018 -0400 |
| b |
| b"@@ -13,13 +13,13 @@\n >HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP ali_length=63; sminR=40.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'26a_F040644': 64}; forward_score=72.0; forward_tag=gaatatc; experiment=wolf_diet; seq_a_single=45; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=153; reverse_tag=gaatatc; count=64; seq_length=99; status=full; mode=alignment; seq_b_single=45; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca\n gcctgaaactcaaaggacttggcggtgctttacatccct\n->HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP ali_length=62; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'29a_F260619': 3}; forward_score=72.0; seq_a_mismatch=2; forward_tag=gcctcct; experiment=wolf_diet; seq_a_single=46; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gcctcct; count=3; seq_length=100; status=full; mode=alignment; seq_b_single=46; \n+>HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP ali_length=62; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'29a_F260619': 3}; forward_score=72.0; seq_a_mismatch=2; forward_tag=gcctcct; experiment=wolf_diet; seq_a_single=46; status=full; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gcctcct; count=3; seq_length=100; mode=alignment; seq_b_single=46; \n ttagccctaaacacaaataattacacaaacaaaattgttcaccagagtactagcggcaac\n agcttaaaactcaaaggacttggcggtgctttataccctt\n >HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB ali_length=62; sminR=40.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'29a_F260619': 2}; forward_score=72.0; forward_tag=gcctcct; experiment=wolf_diet; seq_a_single=46; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gcctcct; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=46; \n ttagccctaaacacaagtaattattataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n->HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB sminR=40.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'13a_F730603': 46}; forward_score=72.0; forward_tag=aattaac; experiment=wolf_diet; reverse_score=72.0; seq_b_deletion=0; seq_a_insertion=0; reverse_tag=aattaac; count=46; seq_length=100; status=full; mode=alignment; \n+>HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB sminR=40.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'13a_F730603': 46}; forward_score=72.0; forward_tag=aattaac; experiment=wolf_diet; status=full; seq_b_deletion=0; seq_a_insertion=0; reverse_tag=aattaac; count=46; seq_length=100; mode=alignment; \n ctagccttaaacacaaatagttatgcaaacaaaactattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccctt\n >HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP ali_length=62; seq_ab_match=59; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactat"..b"_diet; seq_a_single=0; status=full; seq_b_insertion=0; seq_b_deletion=50; seq_a_insertion=0; seq_length_ori=58; reverse_tag=gcctcct; count=7; seq_length=4; mode=alignment; seq_b_single=0; \n tttt\n >HELIUM_000100422_612GNAAXX:7:16:16357:19948#0/2_CONS_SUB_SUB ali_length=63; seq_ab_match=57; sminR=40.0; tail_quality=66.7; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'26a_F040644': 1}; forward_score=72.0; score=203.860719115; seq_a_mismatch=5; forward_tag=gaatatc; seq_b_mismatch=1; experiment=wolf_diet; mid_quality=75.6541353383; avg_quality=74.1764705882; seq_a_single=45; score_norm=3.23588443039; status=full; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=153; reverse_tag=gaatatc; count=1; seq_length=99; mode=alignment; head_quality=62.0; seq_b_single=45; \n ttagccctaaacataaacattcaataaacaagaatgttcgccagagtactactagcaaca\n@@ -54,7 +54,7 @@\n >HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP ali_length=62; seq_ab_match=57; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'29a_F260619': 1}; forward_score=72.0; score=207.883730153; seq_a_mismatch=4; forward_tag=gcctcct; seq_b_mismatch=1; experiment=wolf_diet; mid_quality=75.3208955224; avg_quality=74.2532467532; seq_a_single=46; score_norm=3.35296338956; status=full; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gcctcct; count=1; seq_length=100; mode=alignment; head_quality=67.2; seq_b_single=46; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtgctaccggcaat\n agcttaaaactcaaaggacttggcggtgctttatacgctt\n->HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB ali_length=62; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'15a_F730814': 2}; forward_score=72.0; seq_a_mismatch=1; forward_tag=gaagtag; experiment=wolf_diet; seq_a_single=46; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gaagtag; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=46; \n+>HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB ali_length=62; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'15a_F730814': 2}; forward_score=72.0; seq_a_mismatch=1; forward_tag=gaagtag; experiment=wolf_diet; seq_a_single=46; status=full; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gaagtag; count=2; seq_length=100; mode=alignment; seq_b_single=46; \n ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat\n agcttaaaactcaaaggacttggcggtgctttataccttt\n >HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP ali_length=62; seq_ab_match=60; sminR=40.0; tail_quality=67.0; reverse_match=tagaacaggctcctctag; seq_a_deletion=0; reverse_score=72.0; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_primer=tagaacaggctcctctag; sminL=40.0; merged_sample={'29a_F260619': 1}; forward_score=72.0; score=231.873033258; seq_a_mismatch=2; forward_tag=gcctcct; seq_b_mismatch=0; experiment=wolf_diet; mid_quality=77.4179104478; avg_quality=76.0649350649; seq_a_single=46; score_norm=3.7398876332; status=full; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=154; reverse_tag=gcctcct; count=1; seq_length=100; mode=alignment; head_quality=67.0; seq_b_single=46; \n" |