| Previous changeset 6:e4a05086ea02 (2021-10-29) Next changeset 8:8157d59a8190 (2024-11-07) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit cf30b4fab90cf7910bb2900a05b85ca3344aae59 |
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modified:
sRbowtie.xml |
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| diff -r e4a05086ea02 -r 3d5bd42097d7 sRbowtie.xml --- a/sRbowtie.xml Fri Oct 29 19:04:05 2021 +0000 +++ b/sRbowtie.xml Tue Nov 15 00:44:57 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.2.0"> +<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.3.0"> <description>for small RNA short reads</description> <requirements> <requirement type="package" version="1.3.1">bowtie</requirement> @@ -6,7 +6,7 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ #if $refGenomeSource.genomeSource == "history": - bowtie-build -f $refGenomeSource.ownFile genome 1>/dev/null && + bowtie-build --threads \${GALAXY_SLOTS:-4} -f $refGenomeSource.ownFile genome 1>/dev/null && ln -s -f '$refGenomeSource.ownFile' genome.fa && #set index_path = 'genome' #else: |