| Previous changeset 4:d552332dff6d (2020-07-06) Next changeset 6:ca62f52e0d7f (2020-11-27) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit ed7141cff329d11308fe2556eeb01d51bfaa6759" |
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modified:
dropletutils-read-10x.xml |
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| diff -r d552332dff6d -r 3dd08eb96cf6 dropletutils-read-10x.xml --- a/dropletutils-read-10x.xml Mon Jul 06 10:52:50 2020 -0400 +++ b/dropletutils-read-10x.xml Tue Jul 07 12:12:12 2020 -0400 |
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| @@ -1,23 +1,23 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="dropletutils_read_10x" name="DropletUtils Read10x" version="@TOOL_VERSION@+galaxy1"> +<tool id="dropletutils_read_10x" name="DropletUtils Read10x" version="@TOOL_VERSION@+galaxy2"> <description>into SingleCellExperiment object</description> <macros> <import>dropletutils_macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ -ln -s '${matrix}' matrix.mtx && -ln -s '${genes}' genes.tsv && -ln -s '${barcodes}' barcodes.tsv && -dropletutils-read-10x-counts.R - -s . - -c TRUE - -o '${output_rds}' + ln -s '${matrix}' matrix.mtx && + ln -s '${genes}' genes.tsv && + ln -s '${barcodes}' barcodes.tsv && + dropletutils-read-10x-counts.R + -s . + -c TRUE + -o '${output_rds}' -#if $add_metadata.add_metadata_file ---metadata-files "${add_metadata.metadata_files}" ---cell-id-column "${add_metadata.cell_id_column}" -#end if + #if $add_metadata.add_metadata_file + --metadata-files "${add_metadata.metadata_files}" + --cell-id-column "${add_metadata.cell_id_column}" + #end if ]]></command> |