| Previous changeset 11:291923e6f276 (2024-03-18) Next changeset 13:1f0769f0b56b (2024-09-18) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit 3507b06e5d0149d514ede3d1a56c082e89f14f89 |
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modified:
flye.xml macros.xml test-data/result1.log test-data/result1_assembly.fasta test-data/result1_assembly_graph.dot test-data/result1_assembly_graph.gfa test-data/result1_assembly_info.txt |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e flye.xml --- a/flye.xml Mon Mar 18 12:44:09 2024 +0000 +++ b/flye.xml Mon Aug 26 13:54:31 2024 +0000 |
| b |
| @@ -105,7 +105,7 @@ <outputs> <data name="consensus" format="fasta" from_work_dir="out_dir/assembly.fasta" label="${tool.name} on ${on_string}: consensus"/> <data name="assembly_graph" format="graph_dot" from_work_dir="out_dir/assembly_graph.gv" label="${tool.name} on ${on_string}: assembly graph"/> - <data name="assembly_gfa" format="txt" from_work_dir="out_dir/assembly_graph.gfa" label="${tool.name} on ${on_string}: graphical fragment assembly"/> + <data name="assembly_gfa" format="gfa" from_work_dir="out_dir/assembly_graph.gfa" label="${tool.name} on ${on_string}: graphical fragment assembly"/> <data name="assembly_info" format="tabular" from_work_dir="out_dir/assembly_info.txt" label="${tool.name} on ${on_string}: assembly info"/> <data name="flye_log" format="txt" from_work_dir="out_dir/flye.log" label="${tool.name} on ${on_string}: log"> <filter>generate_log</filter> @@ -120,8 +120,12 @@ <param name="generate_log" value="true"/> <output name="assembly_info" file="result1_assembly_info.txt" ftype="tabular" compare="sim_size"/> <output name="assembly_graph" file="result1_assembly_graph.dot" ftype="graph_dot" compare="sim_size"/> - <output name="assembly_gfa" file="result1_assembly_graph.gfa" ftype="txt" compare="sim_size"/> - <output name="consensus" file="result1_assembly.fasta" ftype="fasta" compare="sim_size"/> + <output name="assembly_gfa" file="result1_assembly_graph.gfa" ftype="gfa" compare="diff" lines_diff="10"/> + <output name="consensus" ftype="fasta"> + <assert_contents> + <has_line line=">contig_1"/> + </assert_contents> + </output> <output name="flye_log" file="result1.log" ftype="txt" compare="sim_size"/> </test> <!--Test 02: nano raw--> @@ -139,7 +143,7 @@ <has_size value="803" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> <has_size value="35047" delta="100"/> </assert_contents> @@ -171,7 +175,7 @@ <has_size value="1840" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> <has_size value="420752" delta="100"/> </assert_contents> @@ -199,7 +203,7 @@ <has_size value="367" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> <has_size value="418729" delta="100"/> </assert_contents> @@ -227,14 +231,14 @@ <has_size value="1248" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> - <has_size value="419414" delta="100"/> + <has_size value="419414" delta="1000"/> </assert_contents> </output> <output name="consensus" ftype="fasta"> <assert_contents> - <has_size value="426277" delta="100"/> + <has_size value="426277" delta="1000"/> </assert_contents> </output> </test> @@ -253,17 +257,17 @@ </output> <output name="assembly_graph" ftype="graph_dot"> <assert_contents> - <has_size value="1500" delta="100"/> + <has_size value="1248" delta="500"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> - <has_size value="418422" delta="100"/> + <has_size value="420254" delta="2000"/> </assert_contents> </output> <output name="consensus" ftype="fasta"> <assert_contents> - <has_size value="425147" delta="200"/> + <has_size value="427131" delta="2000"/> </assert_contents> </output> </test> @@ -278,22 +282,22 @@ <param name="keep-haplotypes" value="true"/> <output name="assembly_info" ftype="tabular"> <assert_contents> - <has_size value="286" delta="100"/> + <has_size value="286" delta="200"/> </assert_contents> </output> <output name="assembly_graph" ftype="graph_dot"> <assert_contents> - <has_size value="1273" delta="100"/> + <has_size value="1273" delta="500"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> - <has_size value="418511" delta="100"/> + <has_size value="420254" delta="3000"/> </assert_contents> </output> <output name="consensus" ftype="fasta"> <assert_contents> - <has_size value="425267" delta="100"/> + <has_size value="427131" delta="3000"/> </assert_contents> </output> </test> @@ -313,14 +317,14 @@ <has_size value="1248" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> - <has_size value="419414" delta="1000"/> + <has_size value="419414" delta="2000"/> </assert_contents> </output> <output name="consensus" ftype="fasta"> <assert_contents> - <has_size value="426277" delta="1000"/> + <has_size value="426277" delta="2000"/> </assert_contents> </output> </test> @@ -340,7 +344,7 @@ <has_size value="217" delta="100"/> </assert_contents> </output> - <output name="assembly_gfa" ftype="txt"> + <output name="assembly_gfa" ftype="gfa"> <assert_contents> <has_size value="5110" delta="100"/> </assert_contents> |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e macros.xml --- a/macros.xml Mon Mar 18 12:44:09 2024 +0000 +++ b/macros.xml Mon Aug 26 13:54:31 2024 +0000 |
| b |
| @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.9.3</token> + <token name="@TOOL_VERSION@">2.9.4</token> <token name="@SUFFIX_VERSION@">0</token> <xml name="requirements"> <requirements> |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e test-data/result1.log --- a/test-data/result1.log Mon Mar 18 12:44:09 2024 +0000 +++ b/test-data/result1.log Mon Aug 26 13:54:31 2024 +0000 |
| [ |
| b'@@ -1,95 +1,97 @@\n-[2021-11-22 18:13:09] root: INFO: Starting Flye 2.9-b1768\n-[2021-11-22 18:13:09] root: DEBUG: Cmd: /usr/local/bin/flye --pacbio-raw ./input_0.fastq.gz ./input_1.fastq.gz ./input_2.fastq.gz ./input_3.fastq.gz ./input_4.fastq.gz ./input_5.fastq.gz ./input_6.fastq.gz -o out_dir -t 1 -i 0\n-[2021-11-22 18:13:09] root: DEBUG: Python version: 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) \n-[GCC 9.3.0]\n-[2021-11-22 18:13:09] root: INFO: >>>STAGE: configure\n-[2021-11-22 18:13:09] root: INFO: Configuring run\n-[2021-11-22 18:13:10] root: INFO: Total read length: 7249289\n-[2021-11-22 18:13:10] root: INFO: Reads N50/N90: 11150 / 5790\n-[2021-11-22 18:13:10] root: INFO: Minimum overlap set to 6000\n-[2021-11-22 18:13:10] root: INFO: >>>STAGE: assembly\n-[2021-11-22 18:13:10] root: INFO: Assembling disjointigs\n-[2021-11-22 18:13:10] root: DEBUG: -----Begin assembly log------\n-[2021-11-22 18:13:10] root: DEBUG: Running: flye-modules assemble --reads /tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_0.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_1.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_2.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_3.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_4.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_5.fastq.gz,/tmp/tmpakmcmxzn/job_working_directory/000/8/working/input_6.fastq.gz --out-asm /tmp/tmpakmcmxzn/job_working_directory/000/8/working/out_dir/00-assembly/draft_assembly.fasta --config /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_raw_reads.cfg --log /tmp/tmpakmcmxzn/job_working_directory/000/8/working/out_dir/flye.log --threads 1 --min-ovlp 6000\n-[2021-11-22 18:13:10] DEBUG: Build date: Aug 22 2021 04:46:17\n-[2021-11-22 18:13:10] DEBUG: Total RAM: 15 Gb\n-[2021-11-22 18:13:10] DEBUG: Available RAM: 9 Gb\n-[2021-11-22 18:13:10] DEBUG: Total CPUs: 8\n-[2021-11-22 18:13:10] DEBUG: Loading /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_raw_reads.cfg\n-[2021-11-22 18:13:10] DEBUG: Loading /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_defaults.cfg\n-[2021-11-22 18:13:10] DEBUG: \tbig_genome_threshold=29000000\n-[2021-11-22 18:13:10] DEBUG: \tmeta_read_filter_kmer_freq=100\n-[2021-11-22 18:13:10] DEBUG: \tchain_large_gap_penalty=2\n-[2021-11-22 18:13:10] DEBUG: \tchain_small_gap_penalty=0.5\n-[2021-11-22 18:13:10] DEBUG: \tchain_gap_jump_threshold=100\n-[2021-11-22 18:13:10] DEBUG: \tmax_coverage_drop_rate=5\n-[2021-11-22 18:13:10] DEBUG: \tmax_extensions_drop_rate=5\n-[2021-11-22 18:13:10] DEBUG: \tchimera_window=100\n-[2021-11-22 18:13:10] DEBUG: \tchimera_overhang=1000\n-[2021-11-22 18:13:10] DEBUG: \tmin_reads_in_disjointig=4\n-[2021-11-22 18:13:10] DEBUG: \tmax_inner_reads=10\n-[2021-11-22 18:13:10] DEBUG: \tmax_inner_fraction=0.25\n-[2021-11-22 18:13:10] DEBUG: \tmax_separation=500\n-[2021-11-22 18:13:10] DEBUG: \tunique_edge_length=50000\n-[2021-11-22 18:13:10] DEBUG: \tmin_repeat_res_support=0.51\n-[2021-11-22 18:13:10] DEBUG: \tout_paths_ratio=5\n-[2021-11-22 18:13:10] DEBUG: \tgraph_cov_drop_rate=5\n-[2021-11-22 18:13:10] DEBUG: \tcoverage_estimate_window=100\n-[2021-11-22 18:13:10] DEBUG: \tmax_bubble_length=50000\n-[2021-11-22 18:13:10] DEBUG: \tloop_coverage_rate=1.5\n-[2021-11-22 18:13:10] DEBUG: \trepeat_edge_cov_mult=1.75\n-[2021-11-22 18:13:10] DEBUG: \tweak_detach_rate=5\n-[2021-11-22 18:13:10] DEBUG: \ttip_coverage_rate=2\n-[2021-11-22 18:13:10] DEBUG: \ttip_length_rate=2\n-[2021-11-22 18:13:10] DEBUG: \toutput_gfa_before_rr=0\n-[2021-11-22 18:13:10] DEBUG: \tlow_cutoff_warning=1\n-[2021-11-22 18:13:10] DEBUG: \tkmer_size=17\n-[2021-11-22 18:13:10] DEBUG: \tuse_minimizers=0\n-[2021-11-22 18:13:10] DEBUG: \treads_base_alignment=0\n-[2021-11-22 18:13:10] DEBUG: \tmeta_read_top_kmer_rate=0.40\n-[2021-11-22 18:13:10] DEBUG: \tmaximum_jump=1500\n-[2021-11-22 18:13:10] DEBUG: \tmaximum_overhang=1500\n-[2021-11-22 18:13:10] DEBUG: \trepeat_kmer_rate=100\n-[2021-11-'..b' 3.0 K minimap.bam.bai\n-[2021-11-22 18:14:27] root: DEBUG: 30-contigger/\n-[2021-11-22 18:14:27] root: DEBUG: 409.0 K graph_final.gfa\n-[2021-11-22 18:14:27] root: DEBUG: 0.0 B scaffolds_links.txt\n-[2021-11-22 18:14:27] root: DEBUG: 111.0 B contigs_stats.txt\n-[2021-11-22 18:14:27] root: DEBUG: 367.0 B graph_final.gv\n-[2021-11-22 18:14:27] root: DEBUG: 414.0 K graph_final.fasta\n-[2021-11-22 18:14:27] root: DEBUG: 414.0 K contigs.fasta\n-[2021-11-22 18:14:27] root: DEBUG: 00-assembly/\n-[2021-11-22 18:14:27] root: DEBUG: 61.0 B draft_assembly.fasta.fai\n-[2021-11-22 18:14:27] root: DEBUG: 465.0 K draft_assembly.fasta\n-[2021-11-22 18:14:27] root: DEBUG: 20-repeat/\n-[2021-11-22 18:14:27] root: DEBUG: 414.0 K graph_before_rr.fasta\n-[2021-11-22 18:14:27] root: DEBUG: 183.0 B repeat_graph_dump\n-[2021-11-22 18:14:27] root: DEBUG: 367.0 B graph_before_rr.gv\n-[2021-11-22 18:14:27] root: DEBUG: 367.0 B graph_after_rr.gv\n-[2021-11-22 18:14:27] root: DEBUG: 414.0 K repeat_graph_edges.fasta\n-[2021-11-22 18:14:27] root: DEBUG: 119.0 K read_alignment_dump\n-[2021-11-22 18:14:27] root: DEBUG: --------------------------\n-[2021-11-22 18:14:27] root: INFO: Assembly statistics:\n+[2024-08-19 09:45:11] root: INFO: >>>STAGE: finalize\n+[2024-08-19 09:45:11] root: DEBUG: ---Output dir contents:----\n+[2024-08-19 09:45:11] root: DEBUG: out_dir/\n+[2024-08-19 09:45:11] root: DEBUG: 705.0 B assembly_graph.gv\n+[2024-08-19 09:45:11] root: DEBUG: 464.0 K assembly.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 92.0 B params.json\n+[2024-08-19 09:45:11] root: DEBUG: 30.0 K flye.log\n+[2024-08-19 09:45:11] root: DEBUG: 436.0 K assembly_graph.gfa\n+[2024-08-19 09:45:11] root: DEBUG: 30-contigger/\n+[2024-08-19 09:45:11] root: DEBUG: 462.0 K contigs.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 441.0 K graph_final.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 182.0 B contigs_stats.txt\n+[2024-08-19 09:45:11] root: DEBUG: 436.0 K graph_final.gfa\n+[2024-08-19 09:45:11] root: DEBUG: 0.0 B scaffolds_links.txt\n+[2024-08-19 09:45:11] root: DEBUG: 705.0 B graph_final.gv\n+[2024-08-19 09:45:11] root: DEBUG: 20-repeat/\n+[2024-08-19 09:45:11] root: DEBUG: 705.0 B graph_after_rr.gv\n+[2024-08-19 09:45:11] root: DEBUG: 441.0 K repeat_graph_edges.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 441.0 K graph_before_rr.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 705.0 B graph_before_rr.gv\n+[2024-08-19 09:45:11] root: DEBUG: 436.0 K graph_before_rr.gfa\n+[2024-08-19 09:45:11] root: DEBUG: 564.0 B repeat_graph_dump\n+[2024-08-19 09:45:11] root: DEBUG: 121.0 K read_alignment_dump\n+[2024-08-19 09:45:11] root: DEBUG: 10-consensus/\n+[2024-08-19 09:45:11] root: DEBUG: 449.0 K consensus.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 3.0 K minimap.bam.bai\n+[2024-08-19 09:45:11] root: DEBUG: 1.0 K minimap.stderr\n+[2024-08-19 09:45:11] root: DEBUG: 00-assembly/\n+[2024-08-19 09:45:11] root: DEBUG: 465.0 K draft_assembly.fasta\n+[2024-08-19 09:45:11] root: DEBUG: 61.0 B draft_assembly.fasta.fai\n+[2024-08-19 09:45:11] root: DEBUG: --------------------------\n+[2024-08-19 09:45:11] root: INFO: Assembly statistics:\n \n-\tTotal length:\t419576\n-\tFragments:\t1\n-\tFragments N50:\t419576\n-\tLargest frg:\t419576\n+\tTotal length:\t467534\n+\tFragments:\t3\n+\tFragments N50:\t382469\n+\tLargest frg:\t382469\n \tScaffolds:\t0\n \tMean coverage:\t14\n \n-[2021-11-22 18:14:27] root: INFO: Final assembly: /tmp/tmpakmcmxzn/job_working_directory/000/8/working/out_dir/assembly.fasta\n+[2024-08-19 09:45:11] root: INFO: Final assembly: /tmp/tmpmmr8wbsp/job_working_directory/000/8/working/out_dir/assembly.fasta\n' |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e test-data/result1_assembly.fasta --- a/test-data/result1_assembly.fasta Mon Mar 18 12:44:09 2024 +0000 +++ b/test-data/result1_assembly.fasta Mon Aug 26 13:54:31 2024 +0000 |
| b |
| b'@@ -438,6557 +438,7360 @@\n CACCAGATACTACGTTACCGTTATGGTCAGCGATGTTGCCGCTGGTCAGTTCCAGTTTGT\n CAGTACGGAAAGCTTCAGTATCGAACTGATCAACGTTCACATCCAATACACCCGCCGTTA\n GTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTAACCCAGCAATAGTGGAC\n-ACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAA\n-CCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTG\n-CTGAACGCATCGGTTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTC\n-TACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATG\n-TCTACCGAGATTGCACGTCTCAAAACGCCAGCTGGCAGAACGGGGATGAGAGCTGGCTAT\n-CCTCCAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAA\n-AACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCG\n-GCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAAC\n-ACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAACAGCGTTACGGTGCCCCACG\n-CCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG\n-GCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTACC\n-GCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCC\n-CGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATC\n-TGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATGGCTTGGTCAATGTCGCCACGCA\n-TGAGCGGCGCAACTGGCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCCC\n-CGGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGC\n-GCAACTGAAGCGGCATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAA\n-TGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCTTGGAGAAAACTT\n-TATCAGCCGGGAAATAATGCGGCAACGGTGTTTTAATTATATCGAATGTGATTACAATCG\n-GTGGCGGCGGCACAGTTGGGGTGGCGGGCCTCAGTCCGGAACATTTGAAAACAAGAACCT\n-CGCTTAGGCCTGTGTCCATATTTACGTGGGTAGGATCAATCAGCCCCCCACCCAGTAGAT\n-TCGGTCAACGCAACAGTACTGTAGGAATTAATAGTCAGATGATCGGTATCAAACGTAGCC\n-ATCTTCACCAATGTTCAGCGAAGAACCGTTAGTTAAATCGATAGTATCTGAAGTTAATTT\n-AGATTCCGAAACATTAACCTGAGAACCATTATTAACTGTAAAGTATCAACGATGGAACGA\n-CCTGTAGTATCCCATTCAGAACCGTTATTCAACGCTACGTTAAATACACCGCTCTGGAAG\n-ACCTTGTCTTAAACAACACGTTTCCAGTCATTGTTTTCATATGTTGCATCAGGAGTAAGG\n-CTGTTTGTAGCAACATCATACATTGCTGACGTTTCAGCAACGTTATAAATTGCCTGACCA\n-AACCCACTTGCTTCCGTTTATCGAGAGTGAGATTTAGTTCATCAACGTTGAGGCTATCAT\n-CAGTCCAACCCCCGTTGGTATCTTTCCACCCGTCACCGTTGGAATCATGACCATTCGGAT\n-CAAAATTACTATTCCAGGTGCTGGTAAAGGCAACATCAACCCATCAGCGTTGAATTGCTG\n-AGGAATACATTGTTCTTCATCGCATAGTCGGAAACCTGAAGCAGTAAAGGACATTGCAAC\n-ATCACCCGGGCCAGCATAATCACTCGGTTCATCAGAATTGCCAAAGTGACCAGTTTTGCC\n-ATAAGTATTGCTATCCAGGATATAATTGAACCCGAAGTCACTGTGGAATCTTTTACAGAG\n-ATATTGTTATCCCAAGTATGAGATTCGGTAGTGTAGGTTTCGTTGTAAGTATTACCTTGA\n-GATAATGAAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCA\n-AGATTAACAGCAACGCCTTCACTTGTATCAAATGTCTCATTTGTGTGCTTGGTTACATCA\n-CCACTTTTATAAGAATCAGGGAAGTAAGAGCTTCATAATCATCATCAATAGTAGTGTTAG\n-CAATGTTCAAAGTGAAAACACCACCATCACGCCAGTGTGTATCAACAACCGCATCAGTGT\n-AAAAATCATATCCACCCAGATTATTACCATCTGCATCAAAACGATCATAATAACCGCCAG\n-GCAGCATAGAAGTAATCGAACCGTGAATCACTGAATTACTGATATCAAGCTGATTAGCAG\n-TACTGTTCTGCATAATCATGGTTCAAATAATAGGTTGAGATCGTGCCGTTAACGGTATCG\n-GCGGTTAAAGGACTGATCGAAATCACCATTGGTGTTGTTGTAATAGACAAAACCACTATA\n-GTTTACATAGTTGCCATCTACAGTGCCTGCCTTATCCATATGATCCCAATCAAGTGCTGT\n-AACGGGATTATCGATATAAGTCCAGGTATCATAGTTTGCTGCATTAGCCTGAGAGGTGAT\n-AGCCAGAGTGCAAGCCAATGCTAATTGTGATACTACAAGTTTCTTTTCCCAGGAGTGCAT\n-TTGTCATCCCTCCTCAGGGACGTAATAAGTTGATCCATCAATTATCAATGCATAGAAAAC\n-ATATTATGTTTCGCGCTAACGATTATGCTGCGTTACAGACGAATGGTTCAATTATTCTTT\n-CCCCTAAGTCCCGAATTTGGACATATATAATTTATGGAGAAAAACACGCATCAAATTCAT\n-AAAAGCACAGTATTTCAACATGTTGCAGATAATTTTGTTTTTGAAGCATACGCATAATAA\n-ATATCACAAACACAAACCAGATAAATATCCTATGAATATGCAACAAAGTTTTAATTATTC\n-AATTTATAGCAGCGCAACAAAACTCCAAAAAATAATAACCAACAGCTATAAATAAAGATT\n-AAAAAATATTTTCAGTGAATATAAAATTATTGCTGTTTCTATTAAAAAGATGTCCTGGCC\n-TCCTCTTCCATTCTCTTCTTGTCAACATCGCGACAACTTTCGTAAAACATCCCTACCCTG\n-CTTCAGGTATACTATGCCCCTCGATTCCACAAAACACCAGGCAGACCATGACAGACTTAA\n-TCCAACGCCCTCGTCGCCTGCGCAAATCTCCTGCGCTCGCGCTATGTTTTGAAGAGACAA\n-CACTTAGCCTTAACGACCTGGTGTTGCCGATCTTTGTTGAAGAAGAAATGACGACTACAA\n-AGCCGTTGAAGCCATGCCAGGCGTGATGCGCATTCCAGAGAAACATCTGGCACGCGAAAT\n-TGAACGCATCGCCAACGCCGGTATTCGTTCCGTGATGACTTTTGGCATCTCTCACCATAC\n-CGATGAAACCGGCAGCGATGCCTGGCGGGAAGATGGACTGTGGCGCGCGTATGTCGCGCA\n-TCTGCAAGCAGACCGTGCCAGAAATGATCGTTATGTCAGACACCTGCTTCTGTGAATACA\n-CTTCTCACGGTCACTGCGGTGTGCTGTGCGAGCATGGCGTCGAAAACGACGCGACTCTGG\n-AAAA'..b'AAAAAA\n+CAGCCCCTGATTTTTGCCCAAACCCCTGGGTTACGCTTGCGCAAAGCTGACCTGCCTCGT\n+TGTGATCTTTCAGATTGAGGTTTCATTTAGTTTTCCAGTACTCGTGCGCCCCCCGTATCC\n+AGCCGGCAAATATGACAAAACCTTCCTGATTTTGCAGGTAGTTCTTACCCAACCAGTCGG\n+CAACGCGCGGGGCGGTTTCCGGCTTGTCACACAGAGCGAACAAGGTCCGGGCCGGAGCCG\n+GAGATACCGCTCGCTACCGCGCCATTTCCGCGACCGCCTGCCGCGCCTGCCGGAAGCCTG\n+GCAGTAACCGTTCACGGTAGGTTCACGCGATAACATCTTTTCATACAGCGTTCGCGGCAA\n+GCTCAGGCTGACGGGAATAGCAGGCGTGAATGAAGCCTGCCAGATGTCGCCCGTGCGCAA\n+TGCAATCCTGGCGCGATACTGCCCCGGTAAAATAGCCCTGGCTTTTCCGTCGAGACTTTA\n+ATCCCCGGATACGCCAGCACCCACAGCCACTCATCCAAACCTGGCACTTGCTGGCTGATG\n+ATGTCGTTTTCTTCGATCATCAACTGCATACCACCGAGAAAACACGGTGCCACGTTGTCG\n+TAATGAATGCTGCCGGAGATACGGCCTTCCAGCTCGCCCATCAAAAGCCAGCGAACGAGT\n+GTCATTAAGCGGCTTGCCGCAGTGTTCAATTTCATCCCATCAGCGCCGCGACCACGAAAC\n+AGGCACTGGAGCCTAAGCCCGAACCGATCGGCATATTCTTTTCCAGGGTCATCGCCACTG\n+GAATTTGCTTACCCAGTTCCTGGCAAAAACGCCTCCCAGCACTGATAAACGATATTTTCC\n+CGTGGTTTCTGACGGCAGCCTTATCCGGGCAAAGCGTCCGAGGTTGTTGAGACTGAATGT\n+CTCTGCCGCCTCAACCGTGACTACATCTCCGAGCAATGCACCATCAACAGGTGTCACCGC\n+CGCCCCGAGCACATCAAACCCGACGCTCATATTGGCACTGGAAGCCGGGGCATAAACTTT\n+AACCATTTTCAGACTCCTAACTTCCATGAGAGGGTACGTAGCAGATCAGCAAAGACACCG\n+GCAGCTGTAACCGTCAATTTGCCCGCACCATATCCGCGCAGTACCAAACGGCAAGCGGCT\n+GATAATAGTGGCTTAAGAGCCAGGGCGTTTTCGCCATTTTTCACTTTGAACAGCGGATCA\n+TTACCATCCACTTCGGCAATCTTCACGCGGCAGACGCCATCTTCATCAATATTGCCAACA\n+TAGCGCAAAACCTTTCCCTTCATCACGGGCCTTCGCCACGCGCGCGGCAAAGAGATCGTC\n+GAGTTGTGACAGATTCGCCATAAAAGCGGCAACATCACCCTCGGCGTTAACCTCTGCGGG\n+GCAGCACAGGTTCAATTTCAATATCCGCCAGCTCCAGTTCACTCCCGTTTCACGAGCGAG\n+AATCAATAGTTTACGCGCCACATCCATACCAGAAAGATCATCTCGCCGGGTCCGGTTCGG\n+TATAACCCATTTCCCGACGCAGCGTGGTCGCCTCGGAGAAACTCATGCCTTCGTAAACTT\n+GCCGAAGATATAAGAAAGCCGAACCAGACAAGAATGCCGGAGAACTTCATCAATTCATCA\n+CCTGCATTGAGCAGATTTTGCAGGTTCTCAATAACCGGTAATCCAGCCCCAACGTTGGTG\n+TCATAGAGGAATTTACGCCGCGATTTTTCCGCCCGCATAACGCAACTGATGGTAGTAATC\n+CATCGACGAGGTGTTTGCCTTTTTGTTCGGCGTGACAACGTGGAAACCTTCGCGCCAGGA\n+AGTCGGCATATTGATCCGCCACCTGCCTGGCTGGAAGTGCAGTCAACAATGACCGGGTTT\n+CAGCAGATGATATTCTTTTCACAAGGCGAGTTAGCGCCCGGGATAAACGGCTCTTGGCTT\n+GCGCCAGTTCTTCCTGCCAGTTTTCCAGATTAAGGCCCATGTAATTGGTGAGCAGAGCCT\n+TCGAGTTGGCAACACCGCAGACACGTAAGTCGATTATTTTATTCTTCAGCCCAGCTTTGC\n+TGACGCGCTTCAGTTGCTCCAGCAGCGGCACCGCCAACGCCACCGACGCCAATCACAAAC\n+ACTTCGATAACCTGATCGGTATTGAACAGGCATCTGATGAGTAACGCGCACGCCAGTGGT\n+CGCATCATCGTTATTTACCACGACACGAGATTGAGCGTTCAGAAGATCCCTGAGCAATGG\n+CGACAATGTTGATATTTGGCGCGGCCAGGCGGCAAAGAATTCTCGCCGAGATCCCACGCA\n+AGGTGCGCATACCATCACCTCCCACGAGATAAATGGCCAGCCGTTCCGCACTGCCAGCGG\n+CTCCCAGTAGCCTTCTTTCAGTTCCAGGTAGAACTCTCCTGGCATGCCCGTTCAGCTCGC\n+ACACAGTCGCTTTGTGGAACGCAGAAACTAATGCGTATTCGGAAAGATGATTGCGTAATC\n+AGCCACACGGAAATACCGGGCGCGTGACATCGGCTGCAAAGCGCGCCGCCGCCATGCCGA\n+CCATCCTATCATCCCCGGACCAGAACGCTGAAACATGCCATGTTAATTCAGATTGGAAAT\n+GGTTCCCTTGACCGGTAATTCGTCTTCAACACGGCTGGCACCAATTAGCGTACCTGGTGC\n+TTGAGGATTTCCGGTATTTTTTAATCAGGCAAAGGGATCTGGAACTGGGCGATGGGGGTA\n+ATGGTGCGGGTGAAGAACTTTAGCGCCGAAAGTAGGAAACCCATCGCTTCCTGGTAGGAA\n+CATCGACTTCAACAACCTCGCATCGGGGCCACCTGACGCGGGTCGCAGGTATAGACCCCC\n+GTCAACGTCCGCCAAATCTCGCAACAATCGGGGCCCGTAAACAGGCAGCCAGCACCGCAG\n+CAGAAGTAGTCGGAACCGTTGCGTCCAAGCACCACCAGTTCGCCTTTTTCATTACCGGCG\n+GGGGAACCTGCCATCAGCACGCATGTGATCAGCCGGAATGCAGGGCTTGCCGCAATTAGG\n+CGGGTGGACTCAGGAAATCGACGGTAGATTCGAGGTAATGCCCCACCGCCAGCAGTTTTT\n+CGACCGGATCGATAACCTAAGTACTTGTGACGCCGGCGCCGTCTATACGCCGGCATAAAT\n+GGCGAGCGACATTTCTCGCCACGGCCAAAATCGAGCGCCAGCGTTTGATGCTAATCCGGC\n+ACTGCCCAACAAACTATTGCCATGGGCAGACATGTTTTATTGGGCCAAATTCCTGATCGA\n+CGAAAGTTTTCAATGCGCCAGCGGGAACCCCCGGCGGGGCGGCGGCGGTCTACCAGGTCA\n+AAAGGTATCGGCAAAAAATACGTTGGCCATCGCGATTATTGGTAAAGCATCCTGGCCCCT\n+AAATGGTATTTTGTCAATTCATCGACACCAAGGTGTTGGTGATTTTTGCGGGCGGGTCAG\n+AGAGGGACGGTGGGCCTACCTGCCTCCTGCCTTCGGCTCGGCTTTCTAGAATATCGGCAA\n+ACACGCGAAAAAACGTTCTGCATTTGCCACTGATGATACCGCCCGAAACTTCAACACTCG\n+CATGGTGTTTACCTCGTTACCTTTGGTCGAAAAAAAAAGCCCCGCACTGTCTAAAGGTGG\n+CGGGCTTTTATTACATGTGTTTCCGTACGCGTACGGCCCCGCTACCGATACCTGTGGTAA\n+TCGGTGAATGTGGGGGTATACGGTGGTGCTATCGTTTTCATGGATGTTGATGAATCTCTG\n+GTATTTTTATCTGTCGGTGCGCTAGGCCTATATTGGTTAAAAATATTTGTGGTTCCGAGT\n+CAATAAAATTTTTAATTTACCACGGGGCCCAAGGAAACCAGTTCAATAAACATGCTATCA\n+GACACCTTTTTTTAGATCCACC\n' |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e test-data/result1_assembly_graph.dot --- a/test-data/result1_assembly_graph.dot Mon Mar 18 12:44:09 2024 +0000 +++ b/test-data/result1_assembly_graph.dot Mon Aug 26 13:54:31 2024 +0000 |
| [ |
| @@ -5,6 +5,12 @@ "1" [style = "filled", fillcolor = "grey"]; "2" [style = "filled", fillcolor = "grey"]; "3" [style = "filled", fillcolor = "grey"]; -"3" -> "2" [label = "id 1\l419k 14x", color = "black"] ; -"1" -> "0" [label = "id -1\l419k 14x", color = "black"] ; +"4" [style = "filled", fillcolor = "grey"]; +"5" [style = "filled", fillcolor = "grey"]; +"5" -> "6" [label = "id 1\l370k 15x", color = "black"] ; +"7" -> "3" [label = "id -1\l370k 15x", color = "black"] ; +"7" -> "2" [label = "id 2\l26k 7x", color = "black"] ; +"1" -> "6" [label = "id -2\l26k 7x", color = "black"] ; +"6" -> "4" [label = "id 3\l49k 12x", color = "red" , penwidth = 3] ; +"0" -> "7" [label = "id -3\l49k 12x", color = "red" , penwidth = 3] ; } |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e test-data/result1_assembly_graph.gfa --- a/test-data/result1_assembly_graph.gfa Mon Mar 18 12:44:09 2024 +0000 +++ b/test-data/result1_assembly_graph.gfa Mon Aug 26 13:54:31 2024 +0000 |
| b |
| b'@@ -1,3 +1,9 @@\n H\tVN:Z:1.0\n-S\tedge_1\tTTTCCTTTTCCTACTGTACTTCTCAAATATTCCAGGCGACTTTCGTGATGATTCACAGCATGTTTCACGATTCGCTAACCCTAATCCGCTACCGCGGTTAGCCGGGAACCCCGCTTTATCAACGCGATAAAAACGCTTCGGTCAGGCCGCGGAATAATGCTCCGGTGCAATGCCCCGGGTCCGTTATCTTCAACGCTAAATTCGGCACCGTGCGGCACTCGCTGCCAGCGTACGGTGATATGCGTGCCCTTCCGGCGTATGGATTCACGCGTTATTAGACCAGGTTTGAAATCGCACTGCGGTAGCTGATCTTCGTTTGCCAGACACCTTGAGGCCGTTATCTATCTCAAAGGTAAATGTCTGTTTTTCTGACTCAGAGTCTGAGCCTCGCGCTCAACAACGCGCAGCATCATCGGCACAATCAACCTTTTCATTTGAGGAATGCGTCGGTGCGGCTTCTATTTTCGACAGCGTCAGCAAATGCTTCACCAGGTCCTTCCATCCCGCTGGGTCTGCTCGCGCATGGTGTGCAACGCTTTTTCGCGTACCGCGCCTTCCAGCGGCTGCTCAATTCATCATCTCCAGGTAACCCCTGTAACACGGTCCAATGGCGTACGTAACTCATGGCTCACCGTTGGCAAAAAAGTTACGCCGCGCCCCTTCCAGTTGATGCATTTGCGTGACATCACGCGCCACCATCAGCAACTGTTTGTGGGTATAAGGCATGACGCGAATTTCCAGATGCCGCCCGGTGGTTTGAGCACAGATTGAGCGGGCGAGAAAAATCACGCGTTTTCAGATATTGCGTAAACTCCGGGTAAACGCAGTAGTTAAGGATGTTCTGCCCGTTATCTTCCGGCCAGCGCAAACCAAGAAATTTGTTGCGCCAGACCGTTACACCAGAAAATACCGCCCTTTTCCTGGTCAGCACCACCGCGTCGGGCAGCGACTCCGCGCCGCTACGAAAAGCGTTTAATCAGATTGCCCACTGTTCACGGCGGGCGTTTTTTATTTCCGCAGCTGCATCTGGTGTAAGCCGTATAGTAGCGGTTCCCAGCTACCACCGCCCCGGTGGCGGGGTCATACTGCGATCCCACCCAACAGCCACCATGAAAAGGCGCAATAAATTCCAGAAATGCCAGATAAGCAGTCCTGTTACCGATGCCAGCAAAAACCAGGGCAGGTAACCAAAAAATGCACCCAAGGATGAAAGCCGGGAGGCAGCAAAGTAGCAGCTCCAGCACCAGGCCTTTCCACGACAGCCGTTCCAGCACCGTAAGATACTCCAGTTAAGAAAATCATAAGCCCTGCTCTGCGCCGGAGAGCAAGGCGTTAAAAGCGGGGTTGAAAAACGATTATCCTGTACCGCGCACGGTCTGCCACCATGCGGTCATGCCCGCCGGGCTCCAGAGCTTTACGCAGGCGACGAATGTGGACATCGACCGTGCGGTCTTCCACATACACGTTAGTTCCCAGACGTGTTTAACAGCTGCTCGCGCTGTACACGCGCTCAGGATGCGTCATAAAAAAGTGCAGCAGTTTTAAATTCTGTCGGCCCCATCTCCAGCGGCTCTTCGCCCGCCATCACTCGGTGAGATGTCGGGTCGAGACTTAATCCCTGCATCTTAATCACCTCTTCCACCGCCATTGGCGAAATACGGCGCATTACCGCTTTGATTCGCGCCACCAGCTCCTTCGGCGAAAACGGCTTGGTGATATAGTCATCCGCGCCGGTTTCAAGCCGCGCACGCGATCTTCTTCTTTCCCCTCTGGCGGTCAACATCACCACTGGGAATATCCCGGGGTCATCGACTCGCGCTTGAGGTGTTTGATGAACTGGATACCGGAGCCGCCAGGTAACATCCAGTCGAGGAGAATTAAAATCCGGCCAGGGTTCATTCAGTTTGATTCACAGCACTGTCATAATCTTCCGCTTCGACCGGCTGAAAGCCATTTTGTTCGAGCACGAAGAGAGACCAATTTCGGCGAATTGGAGCTTCATCTTCTACGACCAGAATACGTCTCGCCATGATTTGCCCTGTTGTAATAAATAGGTTGCGATCATTAATGCGACGTCATTATGCGTCAGATTTATGACAGATTTATGAAAAGCCTCGTCGCACAATATCTTCAGGTTATTGATTTCCGTGGCGCAGAAAAAAGCAAATGGCACCATCTGTTTGGGTATAATCGCGCCCATGCTTTTTCGCCAGGGAACCGTTATGCGCATCCTTCACACCTCAGACTGGCATCTCTGGCCAGAACTTCTACAGTAAAAGCCGCGAAGCTGAACAATAGGCTTTTCCTTGACTGGCTGCTGGAGACAGCACAAACCCATCAGGTGGATGCGATTATTGTTGCCGGTGATGTTTTCGATACCGGCTCGCCCGCCCAGTTACGCCCGCACGTTATACAACCGTTTTGTTGTCAATTTACAGCAAACTGGCTTTCATCTGGTGGTACTGGCAGGAAACCATGACTCGGTCGCCACGCTGAATGAATCGCGCGATATCATGGCGTCCTCAATACTACCGTGGTCGCCAGCGCCGGACATGCGCCGCAAATCTTGCCTCGTCGCGACGGGACGGCCAGGCGCAGTGCTGTGCCCCATTCCCGTTTTTACGTCCGCGTGACATTATTACCAGCCAGGCGGGGCTTAACGGTATTGAAAAACAGCAGCATTTACTGGCAGCGATTACCGATTATTACCAACAACACTATGCCGATGCCTGCAAACTGCGCGGCGATCAGCCTCTGCCCATCATCGCCACGGGACATTTAACGACCGTGGGGGCCAGTAAAAGTGACGCCGTGCGTGACCATTTATATTGGCACGCTGGACGCGTTTCCGGCACAAAACTTTCCACCAGCCGACTACATCGCGCTCGGGCATATTCACCGCGCACAGATTATTGGCGGCATGGAACATGTTCGCTATTGCGGCTCCCCCATTCCACTGAGTTTTGATGAATGCGGTAAGAGTAAATATGTCCATCTGGTGACATTTTCAAACGGCAAATTAGAGAGCGTGGAAAACCTGAACGTACCGGTAACGCAACCCATGGCAGTGCTGAAAGGCGATCTGGCGTCGATTACCGCACAGCTGGAACAGTGGCGCGATGTATCGCAGGAGCCACCTGTCTGGCTGGATATCGAAATCACTACTGATGAGTATCTGCATGATATTCAGCGCAAAATCCAGGCATTAACCGAATCATTGCCCTGTCGAAGTATTGCTGGTACGTCGGAGTCGTGAACAGCCCGAGCGTGTGTTAGCCAGCCAACAGCGTGAAACCCTCAGCGAACTCAGCGTCGAAGAGGGTGTTCAATCGCCGTCTGGCACTGGAAGAACTGGATGAATCGCAGCAGCAACGTCTGCAGCATCTTTTCACCACGACGTTGCATACCCTCGCCGGGAGAACACGAAGCATGAAAATTCTCAGCCTGCGCCTGAAAAACCTGAACTCATTAAAAGGCGAATGGAAGATTGATTTCACCCGCGAGCCGTTCGCCAGCAACGGCTGTTTGCTATTACCGGCCCAACAGGTGCGGGGAAAACCACCCTGCTGGACGCCATTTGTCTGGCGCTGTATCACGAAACTCCGCGTCTCTCTAACGTTTCACAATCGCAAAATGATCTCATGACCCGCGATACCGCCGAATGTCTGGCGGAGGTGGAGTTTGAAGTGAAAGGTGAAGCGTACCGTGCATTCTGGAGCCAGAATCGGGCGCGTAACCAACCCGACGGTAATTTGCAAGGGCCACGCGTAGAGCTGGCGCGCTGCGCCGACGGCAAAATTCTCGCCGACAAAGTGAAAGATAAGCTGGAACTGACAGCGCGGTTAACCGGGCTGGATTACGGGCGCTTCACCCGTTCGATGCTGCTTTCGCAGGGGCAATTTGCTGCCTTCCTGAATGCCAAACCCAAAGAACGCGCGGGAATTGCTCGAGGAGGTTAACC'..b'CCCAAACCCCTGGGTTACGCTTGCGCAAAGCTGACCTGCCTCGTTGTGATCTTTCAGATTGAGGTTTCATTTAGTTTTCCAGTACTCGTGCGCCCCCCGTATCCAGCCGGCAAATATGACAAAACCTTCCTGATTTTGCAGGTAGTTCTTACCCAACCAGTCGGCAACGCGCGGGGCGGTTTCCGGCTTGTCACACAGAGCGAACAAGGTCCGGGCCGGAGCCGGAGATACCGCTCGCTACCGCGCCATTTCCGCGACCGCCTGCCGCGCCTGCCGGAAGCCTGGCAGTAACCGTTCACGGTAGGTTCACGCGATAACATCTTTTCATACAGCGTTCGCGGCAAGCTCAGGCTGACGGGAATAGCAGGCGTGAATGAAGCCTGCCAGATGTCGCCCGTGCGCAATGCAATCCTGGCGCGATACTGCCCCGGTAAAATAGCCCTGGCTTTTCCGTCGAGACTTTAATCCCCGGATACGCCAGCACCCACAGCCACTCATCCAAACCTGGCACTTGCTGGCTGATGATGTCGTTTTCTTCGATCATCAACTGCATACCACCGAGAAAACACGGTGCCACGTTGTCGTAATGAATGCTGCCGGAGATACGGCCTTCCAGCTCGCCCATCAAAAGCCAGCGAACGAGTGTCATTAAGCGGCTTGCCGCAGTGTTCAATTTCATCCCATCAGCGCCGCGACCACGAAACAGGCACTGGAGCCTAAGCCCGAACCGATCGGCATATTCTTTTCCAGGGTCATCGCCACTGGAATTTGCTTACCCAGTTCCTGGCAAAAACGCCTCCCAGCACTGATAAACGATATTTTCCCGTGGTTTCTGACGGCAGCCTTATCCGGGCAAAGCGTCCGAGGTTGTTGAGACTGAATGTCTCTGCCGCCTCAACCGTGACTACATCTCCGAGCAATGCACCATCAACAGGTGTCACCGCCGCCCCGAGCACATCAAACCCGACGCTCATATTGGCACTGGAAGCCGGGGCATAAACTTTAACCATTTTCAGACTCCTAACTTCCATGAGAGGGTACGTAGCAGATCAGCAAAGACACCGGCAGCTGTAACCGTCAATTTGCCCGCACCATATCCGCGCAGTACCAAACGGCAAGCGGCTGATAATAGTGGCTTAAGAGCCAGGGCGTTTTCGCCATTTTTCACTTTGAACAGCGGATCATTACCATCCACTTCGGCAATCTTCACGCGGCAGACGCCATCTTCATCAATATTGCCAACATAGCGCAAAACCTTTCCCTTCATCACGGGCCTTCGCCACGCGCGCGGCAAAGAGATCGTCGAGTTGTGACAGATTCGCCATAAAAGCGGCAACATCACCCTCGGCGTTAACCTCTGCGGGGCAGCACAGGTTCAATTTCAATATCCGCCAGCTCCAGTTCACTCCCGTTTCACGAGCGAGAATCAATAGTTTACGCGCCACATCCATACCAGAAAGATCATCTCGCCGGGTCCGGTTCGGTATAACCCATTTCCCGACGCAGCGTGGTCGCCTCGGAGAAACTCATGCCTTCGTAAACTTGCCGAAGATATAAGAAAGCCGAACCAGACAAGAATGCCGGAGAACTTCATCAATTCATCACCTGCATTGAGCAGATTTTGCAGGTTCTCAATAACCGGTAATCCAGCCCCAACGTTGGTGTCATAGAGGAATTTACGCCGCGATTTTTCCGCCCGCATAACGCAACTGATGGTAGTAATCCATCGACGAGGTGTTTGCCTTTTTGTTCGGCGTGACAACGTGGAAACCTTCGCGCCAGGAAGTCGGCATATTGATCCGCCACCTGCCTGGCTGGAAGTGCAGTCAACAATGACCGGGTTTCAGCAGATGATATTCTTTTCACAAGGCGAGTTAGCGCCCGGGATAAACGGCTCTTGGCTTGCGCCAGTTCTTCCTGCCAGTTTTCCAGATTAAGGCCCATGTAATTGGTGAGCAGAGCCTTCGAGTTGGCAACACCGCAGACACGTAAGTCGATTATTTTATTCTTCAGCCCAGCTTTGCTGACGCGCTTCAGTTGCTCCAGCAGCGGCACCGCCAACGCCACCGACGCCAATCACAAACACTTCGATAACCTGATCGGTATTGAACAGGCATCTGATGAGTAACGCGCACGCCAGTGGTCGCATCATCGTTATTTACCACGACACGAGATTGAGCGTTCAGAAGATCCCTGAGCAATGGCGACAATGTTGATATTTGGCGCGGCCAGGCGGCAAAGAATTCTCGCCGAGATCCCACGCAAGGTGCGCATACCATCACCTCCCACGAGATAAATGGCCAGCCGTTCCGCACTGCCAGCGGCTCCCAGTAGCCTTCTTTCAGTTCCAGGTAGAACTCTCCTGGCATGCCCGTTCAGCTCGCACACAGTCGCTTTGTGGAACGCAGAAACTAATGCGTATTCGGAAAGATGATTGCGTAATCAGCCACACGGAAATACCGGGCGCGTGACATCGGCTGCAAAGCGCGCCGCCGCCATGCCGACCATCCTATCATCCCCGGACCAGAACGCTGAAACATGCCATGTTAATTCAGATTGGAAATGGTTCCCTTGACCGGTAATTCGTCTTCAACACGGCTGGCACCAATTAGCGTACCTGGTGCTTGAGGATTTCCGGTATTTTTTAATCAGGCAAAGGGATCTGGAACTGGGCGATGGGGGTAATGGTGCGGGTGAAGAACTTTAGCGCCGAAAGTAGGAAACCCATCGCTTCCTGGTAGGAACATCGACTTCAACAACCTCGCATCGGGGCCACCTGACGCGGGTCGCAGGTATAGACCCCCGTCAACGTCCGCCAAATCTCGCAACAATCGGGGCCCGTAAACAGGCAGCCAGCACCGCAGCAGAAGTAGTCGGAACCGTTGCGTCCAAGCACCACCAGTTCGCCTTTTTCATTACCGGCGGGGGAACCTGCCATCAGCACGCATGTGATCAGCCGGAATGCAGGGCTTGCCGCAATTAGGCGGGTGGACTCAGGAAATCGACGGTAGATTCGAGGTAATGCCCCACCGCCAGCAGTTTTTCGACCGGATCGATAACCTAAGTACTTGTGACGCCGGCGCCGTCTATACGCCGGCATAAATGGCGAGCGACATTTCTCGCCACGGCCAAAATCGAGCGCCAGCGTTTGATGCTAATCCGGCACTGCCCAACAAACTATTGCCATGGGCAGACATGTTTTATTGGGCCAAATTCCTGATCGACGAAAGTTTTCAATGCGCCAGCGGGAACCCCCGGCGGGGCGGCGGCGGTCTACCAGGTCAAAAGGTATCGGCAAAAAATACGTTGGCCATCGCGATTATTGGTAAAGCATCCTGGCCCCTAAATGGTATTTTGTCAATTCATCGACACCAAGGTGTTGGTGATTTTTGCGGGCGGGTCAGAGAGGGACGGTGGGCCTACCTGCCTCCTGCCTTCGGCTCGGCTTTCTAGAATATCGGCAAACACGCGAAAAAACGTTCTGCATTTGCCACTGATGATACCGCCCGAAACTTCAACACTCGCATGGTGTTTACCTCGTTACCTTTGGTCGAAAAAAAAAGCCCCGCACTGTCTAAAGGTGGCGGGCTTTTATTACATGTGTTTCCGTACGCGTACGGCCCCGCTACCGATACCTGTGGTAATCGGTGAATGTGGGGGTATACGGTGGTGCTATCGTTTTCATGGATGTTGATGAATCTCTGGTATTTTTATCTGTCGGTGCGCTAGGCCTATATTGGTTAAAAATATTTGTGGTTCCGAGTCAATAAAATTTTTAATTTACCACGGGGCCCAAGGAAACCAGTTCAATAAACATGCTATCAGACACCTTTTTTTAGATCCACC\tdp:i:12\n+L\tedge_1\t+\tedge_3\t+\t0M\tRC:i:2\n+L\tedge_2\t-\tedge_3\t+\t0M\tRC:i:5\n+P\tcontig_1\tedge_1+,edge_3+\t*\n+P\tcontig_2\tedge_3-,edge_2+\t*\n+P\tcontig_3\tedge_3+\t*\n' |
| b |
| diff -r 291923e6f276 -r 3e4f8642c77e test-data/result1_assembly_info.txt --- a/test-data/result1_assembly_info.txt Mon Mar 18 12:44:09 2024 +0000 +++ b/test-data/result1_assembly_info.txt Mon Aug 26 13:54:31 2024 +0000 |
| b |
| @@ -1,2 +1,4 @@ #seq_name length cov. circ. repeat mult. alt_group graph_path -contig_1 419576 14 N N 1 * *,1,* +contig_1 382469 15 N N 1 * *,1,3,* +contig_3 49042 12 N Y 1 * 3,* +contig_2 36023 7 N N 1 * *,-3,2,* |