Repository 'jbrowse2'
hg clone https://toolshed.g2.bx.psu.edu/repos/fubar/jbrowse2

Changeset 41:3e7a4ed46551 (2024-03-01)
Previous changeset 40:e1a3d3221ed3 (2024-03-01) Next changeset 42:713d3a16ac02 (2024-03-01)
Commit message:
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78-dirty
modified:
jbrowse2.py
b
diff -r e1a3d3221ed3 -r 3e7a4ed46551 jbrowse2.py
--- a/jbrowse2.py Fri Mar 01 02:22:44 2024 +0000
+++ b/jbrowse2.py Fri Mar 01 02:27:05 2024 +0000
[
@@ -1149,9 +1149,7 @@
                     bam_index=real_indexes[i],
                 )
             elif dataset_ext == "cram":
-                real_indexes = track["conf"]["options"]["cram"]["cram_index"][
-                    "cram_index"
-                ]
+                real_indexes = track["conf"]["options"]["cram"][ "cram_index"]
                 if not isinstance(real_indexes, list):
                     real_indexes = [real_indexes]