| Previous changeset 5:4e8cf8b6b572 (2014-06-19) Next changeset 7:83fe7d36a64d (2014-06-19) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
| b |
| diff -r 4e8cf8b6b572 -r 3f6014ca8e19 tool_dependencies.xml --- a/tool_dependencies.xml Thu Jun 19 09:14:25 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 19 09:25:22 2014 -0400 |
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| @@ -6,9 +6,14 @@ <package name="pindel" version="0.2.5"> <install version="1.0"> <actions> - <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> + <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> + <action type="shell_command">unzip pindel-master.zip -d pindel</action> <!-- <action type="shell_command">cd pindel</action> - <action type="shell_command">make SAMTOOLS=~/samtools</action> --> + <action type="shell_command">make SAMTOOLS=~/samtools</action> + <action type="move_file"> + <source>pindel</source> + <destination>$INSTALL_DIR/</destination> + </action>--> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> |