Repository 'admixture'
hg clone https://toolshed.g2.bx.psu.edu/repos/dereeper/admixture

Changeset 6:3f66f32dc5d9 (2016-04-13)
Previous changeset 5:97c9c8daa3c3 (2016-04-13) Next changeset 7:c3ebf600f975 (2016-04-13)
Commit message:
planemo upload
modified:
Admixture.pl
b
diff -r 97c9c8daa3c3 -r 3f66f32dc5d9 Admixture.pl
--- a/Admixture.pl Wed Apr 13 07:51:13 2016 -0400
+++ b/Admixture.pl Wed Apr 13 07:53:25 2016 -0400
b
@@ -67,7 +67,7 @@
 my %errors;
 for (my $k = $kmin; $k <= $kmax; $k++)
 {
- system("/apps/www/sniplay.cirad.fr/tools/admixture/admixture_linux-1.23/admixture --cv $input.bed $k >>$directory/log.$k 2>&1");
+ system("admixture --cv $input.bed $k >>$directory/log.$k 2>&1");
  my $cv_error_line = `grep -h CV $directory/log.$k`;
  if ($cv_error_line =~/: (\d+\.*\d*)$/)
  {