| Previous changeset 5:37e37518cad1 (2024-06-03) |
|
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 5f71b597c9495eae67a447744fded834f56ca1f7 |
|
modified:
qiime2_core__tools__export.xml |
| b |
| diff -r 37e37518cad1 -r 40bcc0e139fa qiime2_core__tools__export.xml --- a/qiime2_core__tools__export.xml Mon Jun 03 23:32:51 2024 +0000 +++ b/qiime2_core__tools__export.xml Wed Oct 30 20:00:17 2024 +0000 |
| [ |
| b'@@ -6,14 +6,17 @@\n -->\n <!--\n This tool was automatically generated by:\n- q2galaxy (version: 2024.5.0)\n+ q2galaxy (version: 2024.10.0)\n for:\n- qiime2 (version: 2024.5.0)\n+ qiime2 (version: 2024.10.1)\n -->\n-<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.5.0+dist.he540b0b0" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.10.0+dist.h3d8a7e27" profile="22.05" license="BSD-3-Clause">\n <description>Export data from a QIIME 2 artifact</description>\n+ <xrefs>\n+ <xref type="bio.tools">qiime2</xref>\n+ </xrefs>\n <requirements>\n- <container type="docker">quay.io/qiime2/amplicon:2024.5</container>\n+ <container type="docker">quay.io/qiime2/amplicon:2024.10</container>\n </requirements>\n <command>q2galaxy run tools export \'$inputs\'</command>\n <configfiles>\n@@ -38,6 +41,16 @@\n <option value="Bowtie2Index">Bowtie2Index</option>\n <option value="BrackenDB">BrackenDB</option>\n <option value="DeblurStats">DeblurStats</option>\n+ <option value="Dist1D__ob__Multi__comma__ Independent__cb__">Dist1D[Multi, Independent]</option>\n+ <option value="Dist1D__ob__Multi__comma__ Matched__cb__">Dist1D[Multi, Matched]</option>\n+ <option value="Dist1D__ob__NestedOrdered__comma__ Independent__cb__">Dist1D[NestedOrdered, Independent]</option>\n+ <option value="Dist1D__ob__NestedOrdered__comma__ Matched__cb__">Dist1D[NestedOrdered, Matched]</option>\n+ <option value="Dist1D__ob__NestedUnordered__comma__ Independent__cb__">Dist1D[NestedUnordered, Independent]</option>\n+ <option value="Dist1D__ob__NestedUnordered__comma__ Matched__cb__">Dist1D[NestedUnordered, Matched]</option>\n+ <option value="Dist1D__ob__Ordered__comma__ Independent__cb__">Dist1D[Ordered, Independent]</option>\n+ <option value="Dist1D__ob__Ordered__comma__ Matched__cb__">Dist1D[Ordered, Matched]</option>\n+ <option value="Dist1D__ob__Unordered__comma__ Independent__cb__">Dist1D[Unordered, Independent]</option>\n+ <option value="Dist1D__ob__Unordered__comma__ Matched__cb__">Dist1D[Unordered, Matched]</option>\n <option value="DistanceMatrix">DistanceMatrix</option>\n <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>\n <option value="EMPSingleEndSequences">EMPSingleEndSequences</option>\n@@ -52,12 +65,9 @@\n <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option>\n <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>\n <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>\n- <option value="FeatureData__ob__KEGG__cb__">FeatureData[KEGG]</option>\n <option value="FeatureData__ob__Kraken2Output__cb__">FeatureData[Kraken2Output]</option>\n <option value="FeatureData__ob__Kraken2Report__cb__">FeatureData[Kraken2Report]</option>\n <option value="FeatureData__ob__MAG__cb__">FeatureData[MAG]</option>\n- <option value="FeatureData__ob__NOG__cb__">FeatureData[NOG]</option>\n- <option value="FeatureData__ob__OG__cb__">FeatureData[OG]</option>\n <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>\n <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>\n <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>\n@@ -73,12 +83,15 @@\n <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option>\n <option value="FeatureTable__ob__Design__cb_'..b'ormat\n- - NewickFormat\n- - DistanceMatrixDirectoryFormat\n+ - ErrorCorrectionDetailsDirFmt\n - SingleLanePerSamplePairedEndFastqDirFmt\n- - PlacementsDirFmt\n- - DeblurStatsFmt\n- - SILVATaxidMapDirectoryFormat\n- - QualityFilterStatsFmt\n- - AlignedDNASequencesDirectoryFormat\n- - ImportanceDirectoryFormat\n- - NewickDirectoryFormat\n+ - Kraken2DBDirectoryFormat\n+ - OrdinationDirectoryFormat\n+ - BooleanSeriesFormat\n+ - BLASTDBDirFmtV5\n+ - DADA2StatsFormat\n+ - BLAST6Format\n+ - KaijuDBDirectoryFormat\n+ - ArtificialGroupingDirectoryFormat\n+ - MultiFASTADirectoryFormat\n+ - MAGtoContigsFormat\n+ - DNASingleProfileHmmDirectoryFmt\n+ - RNAFASTAFormat\n+ - ProbabilitiesFormat\n+ - SampleEstimatorDirFmt\n+ - MultiplexedPairedEndBarcodeInSequenceDirFmt\n+ - TableJSONLFileFormat\n+ - LociDirectoryFormat\n+ - QualityFilterStatsDirFmt\n+ - TSVTaxonomyDirectoryFormat\n+ - UchimeStatsFmt\n+ - ProcrustesStatisticsFmt\n+ - SILVATaxonomyDirectoryFormat\n+ - AlphaDiversityFormat\n+ - BLAST6DirectoryFormat\n+ - MultiMAGSequencesDirFmt\n+ - SeppReferenceDirFmt\n+ - DNAMultipleProfileHmmDirectoryFmt\n+ - RNASequencesDirectoryFormat\n+ - ProbabilitiesDirectoryFormat\n+ - PredictionsFormat\n+ - PlacementsFormat\n+ - NewickFormat\n+ - TableJSONLDirFmt\n+ - BrackenDBDirectoryFormat\n+ - ProteinSequencesDirectoryFormat\n+ - GenomeSequencesDirectoryFormat\n - MultiplexedSingleEndBarcodeInSequenceDirFmt\n- - MultiFASTADirectoryFormat\n- - ProcrustesStatisticsFmt\n- - SILVATaxidMapFormat\n+ - EggnogRefDirFmt\n - UchimeStatsDirFmt\n- - Kraken2ReportDirectoryFormat\n- - BLAST6Format\n- - QualityFilterStatsDirFmt\n- - ProbabilitiesFormat\n- - SILVATaxonomyDirectoryFormat\n- - MultiMAGSequencesDirFmt\n+ - AlignedRNAFASTAFormat\n - EMPSingleEndDirFmt\n- - Bowtie2IndexDirFmt\n- - ProcrustesStatisticsDirFmt\n- - DeblurStatsDirFmt\n- - ArtificialGroupingDirectoryFormat\n+ - DADA2StatsDirFmt\n - TaxonomicClassiferTemporaryPickleDirFmt\n- - LociDirectoryFormat\n- - ArtificialGroupingFormat\n- - MAGtoContigsFormat\n- - BrackenDBDirectoryFormat\n- - ProteinFASTAFormat\n- - RNAFASTAFormat\n- - DADA2StatsDirFmt\n- - BLAST6DirectoryFormat\n- - ProbabilitiesDirectoryFormat\n+ - AlphaDiversityDirectoryFormat\n+ - Kraken2ReportDirectoryFormat\n - MultiBowtie2IndexDirFmt\n+ - SILVATaxidMapFormat\n+ - CasavaOneEightSingleLanePerSampleDirFmt\n+ - RNASingleProfileHmmDirectoryFmt\n+ - PredictionsDirectoryFormat\n+ - DeblurStatsDirFmt\n+ - Bowtie2IndexDirFmt\n+ - SeedOrthologDirFmt\n+ - DiamondDatabaseFileFmt\n+ - ProteinFASTAFormat\n+ - AlignedRNASequencesDirectoryFormat\n - EMPPairedEndDirFmt\n- - OrdinationFormat\n- - SeedOrthologDirFmt\n+ - NewickDirectoryFormat\n+ - SequenceCharacteristicsDirectoryFormat\n+ - ContigSequencesDirFmt\n+ - Kraken2DBReportFormat\n+ - RNAMultipleProfileHmmDirectoryFmt\n+ - PlacementsDirFmt\n+ - DecontamScoreDirFmt\n+ - SILVATaxonomyFormat\n+ - DataLoafPackageDirFmt\n+ - SILVATaxidMapDirectoryFormat\n+ - DNAFASTAFormat\n+ - ProteinsDirectoryFormat\n - MAGtoContigsDirFmt\n- - SampleEstimatorDirFmt\n- - PlacementsFormat\n- - ProteinSequencesDirectoryFormat\n- - RNASequencesDirectoryFormat\n- - DNAFASTAFormat\n- - UchimeStatsFmt\n- - AlignedRNAFASTAFormat\n- - TrueTargetsDirectoryFormat\n+ - QIIME1DemuxDirFmt\n+ - DiamondDatabaseDirFmt\n - Kraken2DBReportDirectoryFormat\n- - KaijuDBDirectoryFormat\n- - ContigSequencesDirFmt\n- - FirstDifferencesFormat\n- - SeppReferenceDirFmt\n- - OrdinationDirectoryFormat\n- - PredictionsFormat\n- - ProteinsDirectoryFormat\n- - BLASTDBDirFmtV5\n- - AlignedRNASequencesDirectoryFormat\n- - SequenceCharacteristicsDirectoryFormat\n- - AlphaDiversityFormat\n- - CasavaOneEightSingleLanePerSampleDirFmt\n- - DifferentialDirectoryFormat\n+ - PairedDNASequencesDirectoryFormat\n+ - NCBITaxonomyDirFmt\n+ - DistanceMatrixDirectoryFormat\n+ - BIOMV210Format\n+ - AlignedProteinFASTAFormat\n+ - SingleLanePerSampleSingleEndFastqDirFmt\n+ - BAMDirFmt\n+ - PairedRNASequencesDirectoryFormat\n+ - AlignedProteinSequencesDirectoryFormat\n+ - GenesDirectoryFormat\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n' |