| Previous changeset 0:2c039fc73f1f (2015-01-27) Next changeset 2:d5ea61ff12eb (2017-07-12) |
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modified:
tool_dependencies.xml |
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| diff -r 2c039fc73f1f -r 40dc77f3730c tool_dependencies.xml --- a/tool_dependencies.xml Tue Jan 27 09:06:15 2015 -0500 +++ b/tool_dependencies.xml Wed Feb 04 12:45:52 2015 -0500 |
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| @@ -1,35 +1,35 @@ <?xml version="1.0"?> <tool_dependency> - <package name="perl" version="5.18.1"> - <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="perl" version="5.18.1"> + <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="0.12.7"> - <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="vienna_rna" version="1.8.5"> - <repository changeset_revision="54e961ee33d4" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="6757330f89cd" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="pdf_api2" version="2.023"> - <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="mirdeep2_quantifier" version="2.0"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2-quantifier.tar.gz</action> + <install version="1.0"> + <actions> + <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2-quantifier.tar.gz</action> <action type="move_file"> - <source>quantifier.pl</source> + <source>quantifier.pl</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> - <source>make_html2.pl</source> + <source>make_html2.pl</source> <destination>$INSTALL_DIR</destination> </action> <action type="move_file"> - <source>convert_bowtie_output.pl</source> + <source>convert_bowtie_output.pl</source> <destination>$INSTALL_DIR</destination> </action> <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action> </actions> </install> |