Repository 'seurat_scale_data'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_scale_data

Changeset 4:4147dc085d45 (2020-11-27)
Previous changeset 3:1656179f8e7c (2020-07-11) Next changeset 5:d2f6eac0ad42 (2022-03-04)
Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
modified:
seurat_macros.xml
seurat_scale_data.xml
b
diff -r 1656179f8e7c -r 4147dc085d45 seurat_macros.xml
--- a/seurat_macros.xml Sat Jul 11 08:43:24 2020 -0400
+++ b/seurat_macros.xml Fri Nov 27 13:49:56 2020 +0000
[
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@VERSION@">0.0.7</token>
-    <token name="@SEURAT_VERSION@">3.1.1</token>
+    <token name="@VERSION@">0.0.8</token>
+    <token name="@SEURAT_VERSION@">3.1.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">seurat-scripts</requirement>
@@ -96,6 +96,7 @@
 
     <token name="@VERSION_HISTORY@"><![CDATA[
 **Version history**
+3.1.2_0.0.8: Upd ate metadata parsing
 
 3.1.1_0.0.7: Exposes perplexity and enables tab input.
 
b
diff -r 1656179f8e7c -r 4147dc085d45 seurat_scale_data.xml
--- a/seurat_scale_data.xml Sat Jul 11 08:43:24 2020 -0400
+++ b/seurat_scale_data.xml Fri Nov 27 13:49:56 2020 +0000
[
@@ -70,8 +70,10 @@
 
     <tests>
         <test>
-            <param name="input" ftype="rdata" value="out_findvar.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="variable_genes_seurat.rds"/>
+            <param name="vars_to_regress" value="nCount_RNA" />
+            <param name="use_umi" value="True" />
+            <output name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds" compare="sim_size" delta="1000000000" />
         </test>
     </tests>
     <help><![CDATA[