| Previous changeset 2:ebbdb240c507 (2022-10-21) Next changeset 4:0b6c315489e4 (2022-11-18) |
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Commit message:
planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty |
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modified:
rpranker.xml |
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| diff -r ebbdb240c507 -r 422a5c9f3583 rpranker.xml --- a/rpranker.xml Fri Oct 21 14:57:59 2022 +0000 +++ b/rpranker.xml Mon Oct 24 10:14:47 2022 +0000 |
| [ |
| @@ -14,13 +14,12 @@ <command detect_errors="exit_code"><![CDATA[ python -m rptools.rprank --pathways - #for $input in $pathway_collection - '$input' - #end for + #set files = '" "'.join([str($file) for $file in $pathway_collection]) + "${files}" > '$sorted_pathways' ]]></command> <inputs> - <param name="pathway_collection" type="data_collection" format="sbml" collection_type="list" label="Pathways" /> + <param name="pathway_collection" type="data" format="sbml" multiple="true" min="2" label="Pathways" /> </inputs> <outputs> <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> @@ -28,19 +27,7 @@ <tests> <test> <!-- test 1: check if identical outputs are produced with default parameters --> - <param name="pathway_collection" > - <collection type="list"> - <element name="rp_003_0261" value="rp_003_0261.xml" /> - <element name="rp_003_0131" value="rp_003_0131.xml" /> - <element name="rp_003_0001" value="rp_003_0001.xml" /> - <element name="rp_002_0021" value="rp_002_0021.xml" /> - <element name="rp_002_0011" value="rp_002_0011.xml" /> - <element name="rp_002_0001" value="rp_002_0001.xml" /> - <element name="rp_001_0011" value="rp_001_0011.xml" /> - <element name="rp_001_0006" value="rp_001_0006.xml" /> - <element name="rp_001_0001" value="rp_001_0001.xml" /> - </collection> - </param> + <param name="pathway_collection" value="rp_003_0261.xml,rp_003_0131.xml,rp_003_0001.xml,rp_002_0021.xml,rp_002_0011.xml,rp_002_0001.xml,rp_001_0011.xml,rp_001_0006.xml,rp_001_0001.xml"/> <output name="sorted_pathways" file="lycopene_ranked_pathways.csv" ftype="csv" compare="diff" sort="true" /> </test> </tests> |