| Previous changeset 2:f29e21388219 (2015-12-17) Next changeset 4:576963db5f1b (2017-01-20) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 29f6e6424a37947adbe1eba92f0e7d3c83efc042-dirty |
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modified:
alignment.xml chimera.xml clustering.xml dereplication.xml masking.xml search.xml shuffling.xml sorting.xml test-data/alignment_result1.fasta test-data/chimera_result1.fasta test-data/chimera_uchimeout_result1.tabular test-data/clustering_blast6out_result2.tab test-data/clustering_centroids_result1.fasta test-data/clustering_centroids_result2.fasta test-data/clustering_centroids_result4.fasta test-data/clustering_notmatched_result2.fasta test-data/clustering_uc_result3.uc test-data/sorting_result4.fasta tool_dependencies.xml vsearch_macros.xml |
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removed:
test-data/clustering_blast6out_result1.tab test-data/clustering_notmatched_result1.fasta |
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| diff -r f29e21388219 -r 4258854759ba alignment.xml --- a/alignment.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/alignment.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_alignment" name="VSearch alignment" version="@VERSION@.1"> +<tool id="vsearch_alignment" name="VSearch alignment" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba chimera.xml --- a/chimera.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/chimera.xml Tue Mar 01 07:07:03 2016 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="vsearch_chimera_detection" name="VSearch chimera detection" version="@VERSION@.1"> +<tool id="vsearch_chimera_detection" name="VSearch chimera detection" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba clustering.xml --- a/clustering.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/clustering.xml Tue Mar 01 07:07:03 2016 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_clustering" name="VSearch clustering" version="@VERSION@.2"> +<tool id="vsearch_clustering" name="VSearch clustering" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> @@ -10,13 +10,13 @@ <![CDATA[ vsearch @GENERAL@ - - #if $clustering_mode.clustering_mode_select == 'cluster_fast': + + #if $clustering_mode.clustering_mode_select == 'cluster_fast': --cluster_fast "$infile" - #else if $clustering_mode.clustering_mode_select == 'cluster_smallmem': + #else if $clustering_mode.clustering_mode_select == 'cluster_smallmem': --cluster_smallmem "$infile" #end if - ##--clusters STRING output each cluster to a separate FASTA file + ##--clusters STRING output each cluster to a separate FASTA file #if $maxrejects: --maxrejects "$maxrejects" @@ -59,10 +59,10 @@ $sizein $sizeout --strand "$strand" - $usersort - #if $uc: + $usersort + #if $uc: --uc "$uc_outfile" - #end if + #end if ]]> </command> @@ -131,22 +131,6 @@ <tests> <test> <param name="infile" value="BioMarKs5k.fsa.bz2" ftype="fasta" /> - <param name="id" value="0.99"/> - <param name="maxaccepts" value="1"/> - <param name="maxrejects" value="2"/> - <param name="sizeout" value=""/> - <param name="outputs" value="--centroids,--alnout,--blast6out,--notmatched" /> - <output name="centroids" file="clustering_centroids_result1.fasta" ftype="fasta" /> - <output name="blast6out" file="clustering_blast6out_result1.tab" ftype="tabular" /> - <output name="notmatched" file="clustering_notmatched_result1.fasta" ftype="fasta" /> - <!-- The result following result files would be too big --> - <!--output name="matched" file="clustering_matched_result1.fasta" ftype="fasta" /--> - <!--output name="alnout" file="clustering_alnout_result1.fasta" lines_diff="2" ftype="fasta" /--> - <!--output name="fastapairs" file="clustering_fastapairs_result1.fasta" ftype="fasta" /--> - <!--output name="msaout" file="clustering_msaout_result1.fasta" ftype="fasta" /--> - </test> - <test> - <param name="infile" value="BioMarKs5k.fsa.bz2" ftype="fasta" /> <param name="clustering_mode_select" value="cluster_smallmem"/> <param name="usersort" value="--usersort"/> <param name="id" value="0.99"/> @@ -158,7 +142,7 @@ <output name="blast6out" file="clustering_blast6out_result2.tab" ftype="tabular" /> <output name="notmatched" file="clustering_notmatched_result2.fasta" ftype="fasta" /> </test> - <test> + <test> <param name="infile" value="BioMarKs5k.fsa.bz2" ftype="fasta" /> <param name="clustering_mode_select" value="cluster_smallmem"/> <param name="usersort" value="--usersort"/> @@ -171,7 +155,7 @@ <output name="centroids" file="clustering_centroids_result2.fasta" ftype="fasta" /> <output name="uc_outfile" file="clustering_uc_result3.uc" ftype="tabular" /> </test> - <test> + <test> <param name="infile" value="BioMarKs5k.fsa.bz2" ftype="fasta" /> <param name="clustering_mode_select" value="cluster_smallmem"/> <param name="usersort" value="--usersort"/> @@ -183,7 +167,7 @@ <param name="iddef" value="0"/> <output name="centroids" file="clustering_centroids_result4.fasta" ftype="fasta" /> </test> - <test> + <test> <param name="infile" value="BioMarKs5k.fsa.bz2" ftype="fasta" /> <param name="clustering_mode_select" value="cluster_fast"/> <param name="usersort" value="--usersort"/> |
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| diff -r f29e21388219 -r 4258854759ba dereplication.xml --- a/dereplication.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/dereplication.xml Tue Mar 01 07:07:03 2016 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="vsearch_dereplication" name="VSearch dereplication" version="@VERSION@.2"> +<tool id="vsearch_dereplication" name="VSearch dereplication" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba masking.xml --- a/masking.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/masking.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.1"> +<tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba search.xml --- a/search.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/search.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_search" name="VSearch search" version="@VERSION@.1"> +<tool id="vsearch_search" name="VSearch search" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba shuffling.xml --- a/shuffling.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/shuffling.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.1"> +<tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> @@ -11,7 +11,7 @@ vsearch @GENERAL@ --output "$outfile" - --seed "$seed" + --randseed "$randseed" --shuffle "$infile" #if str( $topn ): --topn "$topn" @@ -20,8 +20,8 @@ </command> <inputs> <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" /> - <param name="seed" type="integer" value="0" label="Seed" - help="Zero to use random data source. (--seed)"/> + <param argument="--randseed" type="integer" value="0" label="Seed" + help="Zero to use random data source."/> <expand macro="topn" /> </inputs> <outputs> @@ -30,7 +30,7 @@ <tests> <test> <param name="infile" value="db.fasta" ftype="fasta" /> - <param name="seed" value="1"/> + <param name="randseed" value="1"/> <param name="topn" value="5"/> <output name="outfile" file="shuffling_result1.fasta" ftype="fasta" /> </test> |
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| diff -r f29e21388219 -r 4258854759ba sorting.xml --- a/sorting.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/sorting.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.2"> +<tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.0"> <description></description> <macros> <import>vsearch_macros.xml</import> |
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| diff -r f29e21388219 -r 4258854759ba test-data/alignment_result1.fasta --- a/test-data/alignment_result1.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/alignment_result1.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,5 +1,5 @@ -vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmpn4c95N/files/000/dataset_1.dat --alnout /tmp/tmpn4c95N/files/000/dataset_2.dat --query_cov 0.95 -vsearch v1.1.3_linux_x86_64, 7.7GB RAM, 4 cores +vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmpadk_l_yr/files/000/dataset_1.dat --alnout /tmp/tmpadk_l_yr/files/000/dataset_2.dat --query_cov 0.95 +vsearch v1.9.7_linux_x86_64, 7.7GB RAM, 4 cores Query >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15 %Id TLen Target |
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| diff -r f29e21388219 -r 4258854759ba test-data/chimera_result1.fasta --- a/test-data/chimera_result1.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/chimera_result1.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -1,9 +1,9 @@\n->AF281177.1.2172_G|AF281177|R|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Claviceps|Claviceps+sorghicola|Claviceps|Claviceps+sorghicola;size=10\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTC\n-ACCGCGAGTACTGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGAAACAGGACT\n-TTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGCGCG\n-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGT\n-GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>JN938763.1.1011_U|JN938763|U|||11|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Agaricomycotina|Agaricomycetes|Pleurotus|Pleurotus+pulmonarius|Pleurotus|Pleurotus+pulmonarius;size=16\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACTTCAGACCTGGCTGGGCGGTCCGCTTA\n+ACGGCGTGTACTGTCTGGCTGGGCCTTACCTCTTGGTGAGCCGGCGTGCCCTTTATTGGTGTGCGTTGGGGAACCAGGAC\n+TTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTGTGCCTGAATACATTAGCATGGAATAATAAAATAGGACGTGC\n+GGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTAATGATTAATAGGGATAGTTGGGGGCATTGGTATTGAGTCGCTAGAGG\n+TGAAATTCTTGGATTGACTCAAGACCAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n >DQ514862.1.1735_U|DQ514862|U|||11|Eukaryota|Stramenopiles|Ochrophyta|Bacillariophyta|Bacillariophyta_X|Polar-centric-Mediophyceae|Thalassiosira|Thalassiosira+pseudonana|Thalassiosira|Thalassiosira+pseudonana;size=10\n AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGCGACCGGTCTCACAC\n TCAGTGCGAGAACTCGTGTTGTCTCTGGCCATCCTTGGGGATATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCC\n@@ -32,30 +32,18 @@\n TCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATGGAATAATAAGATAGGAC\n GTAGGTACTATTTTGTTGGTTTGCGCACCCACGTAATGATTAATAGAGACAGGCGGGGCTATTCGTATTGCATTGTCAGA\n GGTGAAATTCTTGGATTTCTGCAAGACGAACTACTGCGAAAGCATTTAGCAAGGATGTTTTCA\n->HQ680491.1.1812_U|HQ680491|U|||11|Eukaryota|Stramenopiles|Ochrophyta|Bacillariophyta|Bacillariophyta_X|Raphid-pennate|Cymbella|Cymbella+hebridica|Cymbella|Cymbella+hebridica;size=8\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTTGGAGCAACGTGCCCTTCAC\n-TTGTGTTGGTGCTTGTTTGTCTCCGTCCATCCTTGGGTGGAACCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCAT\n-CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTACGCCGTTGAATATATTAGCATGGAATAATGAGATAGGACC\n-TGGGTACTATTTTGTTGGTTTGCGCACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTCCATTGTCAGAG\n-GTGAAATTCTTGGATTTTTGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCA\n+>JQ665870.1.1023_U|JQ665870|U||cc-3|2013/03/05|Eukaryota|Stramenopiles|Stramenopiles_X|Opalinata|Opalinata_X|Blastocystis-Group|Blastocystis|Blastocystis+sp.|Blastocystis|Blastocystis+sp.;size=7\n+AGCTCCAATAGCGTATATTAACGTTGTTGCAGTTAAAAAGCTCGTAGTTGAAGTGTGGGTGGTGCTGTCTGAGTAACTTC\n+GGTTAGTCAGATGATCACTACCCCCTTCCAGTATCCAGTAGTGGGTATTCAGTTACTTACTATTGTGTGTTGGTCGTTTA\n+CTGTGAGAAAATTAGAGTGTTCAAAGCAGGCGTTTGCTTGAATAGATTAGCATGGAATAATAATTGAAGGCTTTCGTGTT\n+CGATTTGATTGGTTTGTTCATGGAAGCAAGGTTAAAAGGAACAGTTGGGGGTATTCATATTCACTAGTTAGAGGTGAAAT\n+TCTCGGATTTATGGAAGATGAACAAGTGCGAAAGCATTTACCAAGGATGTTTTCA\n >AB594350.1.1721_U|AB594350|U|||11|Eukaryota|Opisthokonta|Metazoa|Mollusca|Bivalvia|Pterioida-Pinnidae|Pinna|Pinna+muricata|Pinna|Pinna+muricata;size=6\n AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTTTAGGCTTGCGGTCCGCTCC\n TTGGCGGTCACTGCTCGTCCTGACCTACCTCCCGGTTTGCCCCTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACG\n TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTCGCTGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCTCG\n GTTCTATTTTGTTGGTTTTCGGGACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGG\n TGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGCATGTTTTCA\n->HQ634837.1.1673_U|HQ634837|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Ceratocystiopsis|Ceratocystiopsis+sp.|Ceratocystiopsis|Ceratocystiopsis+sp.;size=6\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTC\n-ACCGCGTGCACTGGTCCGGCCGGGCCTTTCCCTCTGGGGAGCCGCATGCCCTTCACTGGGCGTGTCGGGGAACCAGGACT\n-TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGTG\n-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCA'..b'C\n GGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTAATGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATTGTCAGAGG\n TGAAATTCTTGGATTTATGAAAGACTAACTTCTGCGAAAGTATCTGCCAAGGATGTTTTCA\n+>GQ330588.1.1452_U|GQ330588|U||Reference|Ramon//13-10-07//09-05|Eukaryota|Stramenopiles|Stramenopiles_X|MAST|MAST-12|MAST-12C|MAST-12C_X|MAST-12C_X+sp.|uncultured|uncultured+MAST-12;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGGATTAGCTATCGGTCCGTGGT\n+TTTTAATCATGTGTACTGTTTTTGTCTATTCCCATCCTTGTAGTGAGTGTATCTGGCATTTAGTTGTCGGGTGCAGGAGC\n+TGCATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTGAATATATTAGCATGGAATGATATTATAG\n+GACTTTGGTACTATTTTATTGGTTTGCATATCAAAGTAATGATTAATAGGGATAGTTGGGGGTATTCATATTTAATTGTC\n+AGAGGTGAAATTCTTGGATTTATGAAAGATGAACTTATGCGAAAGCATTTACCAAGGATGTTTTCA\n >HM581711.1.1770_U|HM581711|U|||gb_191-cc|Eukaryota|Alveolata|Ciliophora|Spirotrichea|Oligotrichia|Oligotrichia_X|Oligotrichia_XX|Oligotrichia_XX+sp.|environmental_samples|uncultured+marine;size=1\n AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGCCAGGGTGCCAATGTCCGCCGA\n AGAGCGTGCGCAGCGGCGCCCTCGCATCCTTCTGTTGACGCCTCTCGGCATTTACTTGCCGGTGGTGGGCTCAGATAATT\n@@ -932,24 +750,18 @@\n TCGTTTACTTTGAGAAAATTAGAGTGTTTAAAGCAGGCATACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACC\n TCGGTTCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTAATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGA\n GGTGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+>KC673431.1.1809_U|KC673431|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Agaricomycotina|Agaricomycetes|Agaricomycetes_X|Agaricomycetes_X+sp.|environmental_samples|uncultured+fungus;size=1\n+AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACTTCAGGCCTGGCCGGGCGGTCCGCCTC\n+ACGGTGTGTACTGTCTGGCTGGGTCTTACCTCTTGGTGAACCTGCATGCCCTTCACTGGGTGTGTAGGGGAACCAGGACT\n+TTTACCTTGAGAAAATTAGAGTGTTCAAAGCANGCCTACGCCCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG\n+GTCCTATTTGTTGGTTTCTAGGATCGCCGTAATGATAAATAGGGACAGTTGGGGGCATTTGTATTGCGTCGCTAGAAGTG\n+AAATTCTTGGATTGACGCAAGACAAACTACTGCGAAGCATTTGCCAAAGGATGTTTTCA\n >KC674974.1.1781_U|KC674974|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Sordariomycetes_X|Sordariomycetes_X+sp.|environmental_samples|uncultured+fungus;size=1\n AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGACCTGGACAGGCGGTCCGCCTC\n ACGGCGAGTACTGTCTTGCTGGGTCTTTCCTCTTGGTGATCTGTTGTTTCGGCAGCAGGGAACCAGGACCTTTACTTTGA\n AAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT\n GTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG\n GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTCA\n->U32401.1.1034_U|U32401|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Claviceps|Claviceps+paspali|Claviceps|Claviceps+paspali;size=1\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTC\n-ACCGCGTGTACTGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGAAACAGGACT\n-TTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAGGACGCGCG\n-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGT\n-GAAATTCTTGGATTTATTGAAGACTAACTACNGCGAAAGCATTTGCCAAGGATGTTTTCA\n->U83122.1.1738_U|U83122|U||Reference|11|Eukaryota|Archaeplastida|Chlorophyta|Chlorophyceae|Chlorophyceae_X|CW-Chlamydomonadales|Gloeococcus|Gloeococcus+maximus|Gloeococcus|Gloeococcus+maximus;size=1\n-AGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGTGTGGGTTGGCGCGGTCCGCTCT\n-GGTGTGCACTGCGCCGGTCCACCTTCCAGCCGGGGACGGGCTCCTGGGCTTCACTGTCTGGGACTCGGAGTCGACGATGT\n-TACTTTGAGAAAATTAGAGTGTTCAAAGCAAGCCTACGCTCTGAATAGTTTAGCATGGAATAACGCGATAGGACTCTGGC\n-CTATCCCGTTGGTCTGTGGGACCGGAGTAATGATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAA\n-ATTCTTGGATTTATGAAAGACGAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCA\n >Z83751.1.1890_U|Z83751|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Annelida|Annelida_X|Annelida_XX|Glossiphonia|Glossiphonia+sp.|Glossiphonia|Glossiphonia+sp.;size=1\n AGCTCCAATAGCGTATGTTATAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTTCGGACTGGTTGCAACCTCG\n CGGCGTAGCGACCCGCTCCGACCTGTTTTCGGTTCTGCGCCCGGTTCTTCTTAACCGAGTGCCGGGTGCGGCCGAGACGT\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/chimera_uchimeout_result1.tabular --- a/test-data/chimera_uchimeout_result1.tabular Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/chimera_uchimeout_result1.tabular Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -5,323 +5,323 @@\n 0.0000\tDQ680046.1.1088_UC|DQ680046|UC|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Stachybotrys|Stachybotrys+chartarum|Stachybotrys|Stachybotrys+chartarum;size=315\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0000\tHQ865593.1.872_U|HQ865593|U|||11|Eukaryota|Stramenopiles|Stramenopiles_X|Bicoecea|Bicoecea_X|Bicoecea_XX|Bicoecea_XXX|Bicoecea_XXX+sp.|uncultured|uncultured+eukaryote;size=265\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0627\tAC193417.150218.152027_U|AC193417|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Zea|Zea+mays|Zea|Zea+mays;size=228\tEU175348.1.814_U|EU175348|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Sordariomycetes_X|Sordariomycetes_X+sp.|uncultured|uncultured+fungus;size=485\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tEU175348.1.814_U|EU175348|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Sordariomycetes_X|Sordariomycetes_X+sp.|uncultured|uncultured+fungus;size=485\t80.1\t78.2\t76.3\t77.1\t78.2\t39\t25\t42\t7\t0\t6\t1.9\tN\n-0.0590\tHQ870089.1.881_U|HQ870089|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Embryophyceae_XXX|Embryophyceae_XXX+sp.|uncultured|uncultured+eukaryote;size=194\tGU971995.1.816_U|GU971995|U|||11|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Ustilaginomycotina|Exobasidiomycetes|Exobasidiomycetes_X|Exobasidiomycetes_X+sp.|uncultured|uncultured+organism;size=424\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\t77.5\t74.7\t77.0\t77.2\t77.0\t25\t23\t51\t10\t0\t6\t0.6\tN\n-0.0000\tAAPE02054660.131.1675_U|AAPE02054660|U|||11|Eukaryota|Opisthokonta|Metazoa|Craniata|Craniata_X|Craniata_XX|Myotis|Myotis+lucifugus|Myotis|Myotis+lucifugus;size=172\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0510\tHQ870089.1.881_U|HQ870089|U|||11|Eukaryota|Archaeplastida|Streptophyta|Embryophyceae|Embryophyceae_X|Embryophyceae_XX|Embryophyceae_XXX|Embryophyceae_XXX+sp.|uncultured|uncultured+eukaryote;size=194\tEU175348.1.814_U|EU175348|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Sordariomycetes_X|Sordariomycetes_X+sp.|uncultured|uncultured+fungus;size=485\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tEU175348.1.814_U|EU175348|U|||11|Eukaryota|Opisthokonta|Fungi|Ascomycota|Pezizomycotina|Sordariomycetes|Sordariomycetes_X|Sordariomycetes_X+sp.|uncultured|uncultured+fungus;size=485\t79.0\t77.1\t77.1\t77.9\t77.1\t33\t26\t44\t7\t0\t6\t1.9\tN\n+0.0311\tAAPE02054660.131.1675_U|AAPE02054660|U|||11|Eukaryota|Opisthokonta|Metazoa|Craniata|Craniata_X|Craniata_XX|Myotis|Myotis+lucifugus|Myotis|Myotis+lucifugus;size=172\tKC672135.1.1740_U|KC672135|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Ustilaginomycotina|Exobasidiomycetes|Malassezia|Malassezia+globosa|environmental_samples|uncultured+fungus;size=356\tKC487520.1.1651_U|KC487520|U||gb197A|cc_2n|Eukaryota|Alveolata|Apicomplexa|Apicomplexa_X|Colpodellidae|Colpodellidae_X|Colpodellidae_XX|Colpodellidae_XX+sp.|environmental_samples|uncultured+Colpodellidae;size=914\tKC672135.1.1740_U|KC672135|U||gb197A|cc_2n|Eukaryota|Opisthokonta|Fungi|Basidiomycota|Ustilaginomycotina|Exobasidiomycetes|Malassezia|Malassezia+globosa|environmental_samples|uncultured+fungus;size=356\t79.8\t78.3\t73.8\t76.6\t78.3\t36\t15\t31\t9\t4\t21\t1.'..b'eference|11|Eukaryota|Excavata|Metamonada|Parabasalia|Cristamonadida|Calonymphidae-Devescovinidae|Calonymphidae-Devescovinidae_X|Calonymphidae-Devescovinidae_X+sp.|#Porotermes#|#Porotermes+symbiont#;size=2\t91.2\t90.4\t88.1\t87.7\t90.4\t10\t2\t7\t7\t5\t9\t0.8\tN\n+0.0000\tX98829.1.1811_U|X98829|U|||11|Eukaryota|Opisthokonta|Metazoa|Mollusca|Polyplacophora|Polyplacophora_X|Lepidozona|Lepidozona+coreanica|Lepidozona|Lepidozona+coreanica;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0000\tY17633.1.1768_U|Y17633|U||Reference|11|Eukaryota|Opisthokonta|Fungi|Glomeromycota|Glomeromycotina|Glomeromycotina_X|Acaulospora|Acaulospora+laevis|Acaulospora|Acaulospora+laevis;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0000\tY17636.1.1698_U|Y17636|U|||11|Eukaryota|Opisthokonta|Fungi|Glomeromycota|Glomeromycotina|Glomeromycetes|Claroideoglomus|Claroideoglomus+claroideum|Claroideoglomus|Claroideoglomus+claroideum;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 0.0000\tZ11590.1.1648_U|Z11590|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Platyhelminthes|Trematoda|Digenea|Schistosoma|Schistosoma+japonicum|Schistosoma|Schistosoma+japonicum;size=1\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n 1.9127\tZ83751.1.1890_U|Z83751|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Annelida|Annelida_X|Annelida_XX|Glossiphonia|Glossiphonia+sp.|Glossiphonia|Glossiphonia+sp.;size=1\tGQ368792.1.1765_U|GQ368792|U|||11|Eukaryota|Opisthokonta|Metazoa|Annelida|Annelida_X|Annelida_XX|Hirudo|Hirudo+orientalis|Hirudo|Hirudo+orientalis;size=5\tJN227970.1.1297_U|JN227970|U|||gb_191-cc|Eukaryota|Opisthokonta|Metazoa|Cnidaria|Cnidaria_X|Anthozoa|Trichogorgia|Trichogorgia+capensis|Trichogorgia|Trichogorgia+capensis;size=2\tGQ368792.1.1765_U|GQ368792|U|||11|Eukaryota|Opisthokonta|Metazoa|Annelida|Annelida_X|Annelida_XX|Hirudo|Hirudo+orientalis|Hirudo|Hirudo+orientalis;size=5\t97.7\t95.4\t81.9\t81.7\t95.4\t55\t0\t3\t8\t0\t5\t2.3\tY\n-0.0395\tZ97583.1.1876_U|Z97583|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Stiphra|Stiphra+robusta|Stiphra|Stiphra+robusta;size=1\tAY121146.1.1811_U|AY121146|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Melanoplus|Melanoplus+sp.|Melanoplus|Melanoplus+sp.;size=3\tEU364522.1.1748_U|EU364522|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Euparatettix|Euparatettix+erythronotus|Euparatettix|Euparatettix+erythronotus;size=2\tAY121146.1.1811_U|AY121146|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Melanoplus|Melanoplus+sp.|Melanoplus|Melanoplus+sp.;size=3\t95.7\t95.5\t94.0\t93.1\t95.5\t9\t1\t7\t9\t8\t3\t0.2\tN\n+0.0486\tZ97583.1.1876_U|Z97583|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Stiphra|Stiphra+robusta|Stiphra|Stiphra+robusta;size=1\tJF795593.1.1850_U|JF795593|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Gomphocerus|Gomphocerus+sibiricus|Gomphocerus|Gomphocerus+sibiricus;size=2\tEU364522.1.1748_U|EU364522|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Euparatettix|Euparatettix+erythronotus|Euparatettix|Euparatettix+erythronotus;size=2\tJF795593.1.1850_U|JF795593|U|||11|Eukaryota|Opisthokonta|Metazoa|Arthropoda|Hexapoda|Insecta|Gomphocerus|Gomphocerus+sibiricus|Gomphocerus|Gomphocerus+sibiricus;size=2\t96.2\t95.1\t94.6\t92.8\t95.1\t9\t2\t4\t12\t7\t4\t1.1\tN\n 0.0246\tZ99946.1.1790_U|Z99946|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Platyhelminthes|Turbellaria|Seriata|Baikalobia|Baikalobia+guttata|Baikalobia|Baikalobia+guttata;size=1\tAJ287559.1.1759_U|AJ287559|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Platyhelminthes|Turbellaria|Seriata|Phagocata|Phagocata+sibirica|Phagocata|Phagocata+sibirica;size=2\tZ99949.1.1760_U|Z99949|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Platyhelminthes|Turbellaria|Seriata|Polycelis|Polycelis+tenuis|Polycelis|Polycelis+tenuis;size=2\tAJ287559.1.1759_U|AJ287559|U||Reference|11|Eukaryota|Opisthokonta|Metazoa|Platyhelminthes|Turbellaria|Seriata|Phagocata|Phagocata+sibirica|Phagocata|Phagocata+sibirica;size=2\t92.6\t92.3\t90.4\t90.4\t92.3\t11\t3\t8\t6\t5\t11\t0.3\tN\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_blast6out_result1.tab --- a/test-data/clustering_blast6out_result1.tab Thu Dec 17 12:53:39 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
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|
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_blast6out_result2.tab --- a/test-data/clustering_blast6out_result2.tab Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_blast6out_result2.tab Tue Mar 01 07:07:03 2016 -0500 |
| b |
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|
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_centroids_result1.fasta --- a/test-data/clustering_centroids_result1.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_centroids_result1.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -1,9698 +1,9698 @@\n >5b3bd3d89041bf6676e95510f0b0b8e6;size=32\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGTTGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGTGACGGGTCGGCGGGGTTGGCTTTTATCGGCCTTCACTGTCGGCTCCCACCCGTAATCGTCCGAGGTGCTCTTAAC\n-CGAGTGTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTGCTCGCCTGAATATCA\n-CAGCATGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTTCTAGACCCGAGGTAATGGTTAATAGAGACA\n-GACGGGGGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAAAGCATTTGCCA\n-AGAATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgtcttcggccgggcggtgccgcc\n+tgataatcaagggcgcgcactgctttgggagcgttggtgtcaaagccgcgctcttttaacggtcggacaataccaccgga\n+gtggtgacgggtcggcggggttggcttttatcggccttcactgtcggctcccacccgtaatcgtccgaggtgctcttaac\n+cgagtgtctcgggcggccggtaacgtttactttgaacaaattagagtgctcaaagcaggtgcttgctcgcctgaatatca\n+cagcatggaatgatggaataggacctcggtcttattttgttggttttcttctagacccgaggtaatggttaatagagaca\n+gacgggggcattcgtactgcgacgctagaggtgaaattcttggaccgtcgcaagacgaacaactgcgaaagcatttgcca\n+agaatgttttca\n >dd9c9696486e4c8e44f64040bfd68af0;size=43\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTCCTGTCTTCGGCCGGGCGGTGCCGCC\n-CGATCAAAGGGCGTCGCACTGCTTTGGGTCGGCGGTGTCAAAGCCGTCGACTTTTAACGGTCGGACAATACCACCGGAGC\n-GGTCGCGTCGGTCCGTCGGGCCTCAGGGTTCGGCGGTCGCCGGCGCGGCCCGTAATCGTCCGAGGTGCCCTTAACAAGGT\n-GTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGTGCATACCTTCGCCTGAATAGTACAG\n-CATGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTTCTAGACCCGAGGTAATGGTTAATAGAGACGGACGG\n-GGGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAAT\n-GTTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggattcctgtcttcggccgggcggtgccgcc\n+cgatcaaagggcgtcgcactgctttgggtcggcggtgtcaaagccgtcgacttttaacggtcggacaataccaccggagc\n+ggtcgcgtcggtccgtcgggcctcagggttcggcggtcgccggcgcggcccgtaatcgtccgaggtgcccttaacaaggt\n+gtctcgggcggccggtaacgtttactttgaacaaattagagtgctccaagcaggtgcataccttcgcctgaatagtacag\n+catggaatgatggaataggacctcggtcttattttgttggtttttctagacccgaggtaatggttaatagagacggacgg\n+gggcattcgtactgcgacgctagaggtgaaattcttggaccgtcgcaagacgaacgactgcgaaagcatttgccaagaat\n+gttttca\n >fc137ae3d4f5eb20104e5d3f1490201c;size=75\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGTCGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGCGGACGGAGGGGTGTCGAGCTCTCGGGCTTTTCGCTTCTCTCCCGCCCGTAATCGTCCGAGGTGCTCTTAACCGAG\n-TGTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTATCGCCTGAATATCACAGCA\n-TGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTCTAGACCCGAGGTAATGGTTAATAGAGACAGACGGG\n-GGCATTCGTACTGCGGCGCTAGAGGTGAAATTCTTGGACCGCCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATG\n-TTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgtcttcggccgggcggtgccgcc\n+tgataatcaagggcgcgcactgctttgggagcgtcggtgtcaaagccgcgctcttttaacggtcggacaataccaccgga\n+gtggcggacggaggggtgtcgagctctcgggcttttcgcttctctcccgcccgtaatcgtccgaggtgctcttaaccgag\n+tgtctcgggcggccggtaacgtttactttgaacaaattagagtgctcaaagcaggtgcttatcgcctgaatatcacagca\n+tggaatgatggaataggacctcggtcttattttgttggttttctctagacccgaggtaatggttaatagagacagacggg\n+ggcattcgtactgcggcgctagaggtgaaattcttggaccgccgcaagacgaacaactgcgaaagcatttgccaagaatg\n+ttttca\n >d9dd80f66077bd29d1569180753d1ea6;size=30\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGCCGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGTGACGGGCCGGCGGGGTTGGTTCGCCCTTCACCGTCGGTCCCCACCCGTAATCGTCCGAGGTGCTCTTAACCGAGT\n-GTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTGCTCGCCTGAATATCACAGCA\n-TGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTCTAGACCCGAGGTAATGGTTAATAGAGACAGACGGG\n-GGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATG\n-TTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgtcttcggccgggcggtgccgcc\n+tgataatcaagggcgcgcactgctttgggagcgccggtgtcaaagccgcgctcttttaacggtcggacaataccaccgga\n+gtggtgacgggccggcggggttggttcgcccttcaccgtcggtccccacccgtaatcgtccgaggtgctcttaaccgagt\n+gtctcgggcggccggtaacgtttactttgaacaaattagagtgc'..b'cb2a92bf4d04e0bf;size=120\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTAGATAAGTGGGTACTTGTACTTT\n-GCTTGTCTACCAGTCTTAGACTGTTACTGTGAGAAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCAT\n-GGAATAACGAATGTGTCTGGAATATTGGTTAATTCTAGATTACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctagataagtgggtacttgtacttt\n+gcttgtctaccagtcttagactgttactgtgagaaaaattagagtgtttcaagcaggctgttgcaggaatacattagcat\n+ggaataacgaatgtgtctggaatattggttaattctagattacgattaatagggacagttgggggcattagtatttaatt\n+gtcagaggtgaaattcttggatttattaaagactaacgtatgcgaaagcatttgccaaggatgttttca\n >b858b313f1df62306272d6837665a1ff;size=65\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCAAGGATCTCAGCGTGGATACACGT\n-TTGAATCCTACCAGTCTTTGACTGTTACTGTGAGAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCAT\n-GGAATAACGAATGTGTCTAGAATCTTGGTTAATTCTAGAATACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttcaaggatctcagcgtggatacacgt\n+ttgaatcctaccagtctttgactgttactgtgagaaaattagagtgtttcaagcaggctgttgcaggaatacattagcat\n+ggaataacgaatgtgtctagaatcttggttaattctagaatacgattaatagggacagttgggggcattagtatttaatt\n+gtcagaggtgaaattcttggatttattaaagactaacgtatgcgaaagcatttgccaaggatgttttca\n >46c166a8a872048e3b43afc09a7ff4e4;size=64\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTAGATAAGTGGGTACTTGTACTTT\n-GCTTGTCTACCAGTCATAGACTGTTACTGTGAGAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCATG\n-GAATAACGAATGTGTCTGGAATATTGGTTAATTCTAGATTACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATTG\n-TCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctagataagtgggtacttgtacttt\n+gcttgtctaccagtcatagactgttactgtgagaaaattagagtgtttcaagcaggctgttgcaggaatacattagcatg\n+gaataacgaatgtgtctggaatattggttaattctagattacgattaatagggacagttgggggcattagtatttaattg\n+tcagaggtgaaattcttggatttattaaagactaacgtatgcgaaagcatttgccaaggatgtttttca\n >5f6b41eee25b85749d6079c416331706;size=52\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCAAGAGACGCATCTGGGGATACCGG\n-TATGCTCTCTACGGTCTCAGGACTGTTACTGTGAGAAAATTAGAGTGTTCAAAGCAGGCTATTGCAGGAATATATTAGCA\n-TGGAATAACGAATGTGTTTACAATTTGGTTAATTGTAGATTTCAATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTAGTTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttcaagagacgcatctggggataccgg\n+tatgctctctacggtctcaggactgttactgtgagaaaattagagtgttcaaagcaggctattgcaggaatatattagca\n+tggaataacgaatgtgtttacaatttggttaattgtagatttcaattaatagggacagttgggggcattagtatttaatt\n+gtcagaggtgaaattcttggattagttaaagactaacgtatgcgaaagcatttgccaaggatgttttca\n >8eece1bfb387537588b482297f3a3861;size=61\n-AGCTCTTTTTGTGTACTTTAAAGTTACTTTGTTTGAAAAGTTCGTCGTCTGTGTTGTTGTTTGAGTTGATTTTTCGAAAG\n-AAAGTAGTACTGTGAGAAAATGGGTTTGTTTCAGATGACTTGTTAGCATGGTATATTTGTGTGTATGTTTAGCGATTGTT\n-TTGTTAAAAATAAGACAAGAAGAGTGGTCGGGGGTGCTCGTATTTGTGGGCCAGAGGTGAAATTCTTGGATTCCACAAGG\n-ACGTCCAATCGCGCAAGCATTCGCCCAGGACACGTCTG\n+agctctttttgtgtactttaaagttactttgtttgaaaagttcgtcgtctgtgttgttgtttgagttgatttttcgaaag\n+aaagtagtactgtgagaaaatgggtttgtttcagatgacttgttagcatggtatatttgtgtgtatgtttagcgattgtt\n+ttgttaaaaataagacaagaagagtggtcgggggtgctcgtatttgtgggccagaggtgaaattcttggattccacaagg\n+acgtccaatcgcgcaagcattcgcccaggacacgtctg\n >cbd30db2f4ec28a4d991954efbe58ec7;size=43\n-ATACCCCTTTATGGAGATGGATTAAACATCCGCGATTGGCTTTATGTTGAAGACCATGTGGATGCATTACTCCTAGCAGC\n-CTGTCGAGGAACATCTGGACGCAGCTATTGCGTTGGTGGCCATGGTGAAAAAACGAATCAAGAGGTGGTCAATGCAATCT\n-GCCATCAGT\n+atacccctttatggagatggattaaacatccgcgattggctttatgttgaagaccatgtggatgcattactcctagcagc\n+ctgtcgaggaacatctggacgcagctattgcgttggtggccatggtgaaaaaacgaatcaagaggtggtcaatgcaatct\n+gccatcagt\n >ddc6ea88330faf28ef92ee4e8b1380cf;size=38\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTTTCA\n+agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttttca\n >ce291c2620b3cd6a0b627ca586ddd4e9;size=40\n-TAAAGTAGCAACTGAACGTAGAATAGGGAAGAAGCTACGAAGAGAGAATA\n+taaagtagcaactgaacgtagaatagggaagaagctacgaagagagaata\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_centroids_result2.fasta --- a/test-data/clustering_centroids_result2.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_centroids_result2.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -1,8256 +1,29973 @@\n->b235271fbc8a6c9d990037857189ee9a;size=86;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGG\n-TTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGC\n-CTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAAGCAGGCTTATGCCATGAATACGTTAGCATGGAATAATGAGATAGG\n-ATTTCGGTACTATTTTGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGT\n-CAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCA\n->7e02ae2e1e404d4e7c6035a6e374d29d;size=105;\n-AGCTCCAATAGCGTATACTAATGTTGTTGCAGTTAAAAAGCTCGTAGTCGGATTTCAGTAGGCTCAGTTAAGTCTCTTCT\n-ATTGAGTTCTTTATGGGCCTGCTTCTTTGACAGAAACTTCTATGTTATTCATTTAGCGTGGGTAGCGACTGTCTCTTTTA\n-CTTTGAGAAAATTAGAGTGTTCAAAGCAGGTATTCGCCTGAATATTACTCTTGGAATAATGCTATAAGACTTTGGTTCTA\n-ATGTATTGGTGATTGGGACCAGAGTAATGATTGATAGGGACGGTTGGGGTCTTACGTACTGCAAAGCGAGAGGTGAAATT\n-CTTGGACCTTTGTATGACGAACAACTGCGAAAGCATTGGACTAGGACGTTCCCG\n->39392bbb9626a64e6663c05b70293e7c;size=94;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGACTGAGGGCGGTTTGCTTG\n-CTAGTATTACTGCCCTATAGTCCGTAGTTTTGCCAGAGGTTTCGGGGTGCTCTTAATCGAGTGTCCCGGGATGCTGGCAG\n-GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCATGGAATAATAGAATAGGAAGT\n-CGTTTCTATTTTGTTGGTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n-GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n->b970fcbdd71ad2a333f702c7ecfe7114;size=63;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGCGACCGGTCACACAC\n-TCTGTGCGTGAACTTGTGTTGTCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCC\n-ATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATGGAATAATAAGATAGGA\n-CTTCGGAACTATTTTGTTGGTTTGCGTTACGAAGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTTCATTGTCAG\n-AGGTGAAATTCTTGGATTTCTGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCA\n->a9d668eae33f9fd4484585d9fe52b05e;size=73;\n-AGCTCCAATAGCGTATACTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTTGGAGTGTGAGTGAATGGTCGATCG\n-AAAGATTGTACTGTTCGGCACACTCTTCTCTTCGGTTGCGTGTGTAGTGCCCTTAACTGAGTGCTGCACTCGACCGGAAT\n-TTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGATTATGTCTGAATATTCGTGCATGGAATAATAAAATAAGAA\n-CTTGGTTCTATTTTATTGGTTTTCGGAACTCGAGTTAATGATTAAGAGGGACAGACGGGGGCATCCGTACTCTGCCGTTA\n-GAGGTGAAATTCTTGGATCGGCGGAAGACGCGCAACTGCGAAAGCATTTGCCAAGAATGTTTTCT\n->da17e1a54e88120e294c7e68e350f47f;size=38;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGGGGGCGCAGATTGTCCGCAGA\n-CGCGTGTGCAGATGCGCCCTTTCATCCTTCTGTTAACGTCTCTTGACATTCATTTGTTGGTGGCGGGCTCAGATATTTTA\n-CCTTGAGAAAATTAGAGTGTTTCAGGCAGGCTCGCGTCGGAATACATTAGCATGGAATAATAGAATAGGACTCAGTCCTC\n-CTTTGTTGGTTTGAGGGGTCAGAGTAATGGTTAATAGGGATAGTTGGGGGCATTAGTATTTGACTGTCAGAGGTGAAATT\n-CTCGGATTTGTTAAAGACTAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->efbd11c972faa734253f779fc4eb2a64;size=70;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAACAGCCTTGAAGCGGTTAACTTT\n-GTAGTTTTACTGCTTTGTAGGCTGTGCTTTTGCTGGAGGTTTAGGGGTGCTCTTGATCGAGTGTCTCTGGATGCCAGCAG\n-GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTAAAATGCCTGAATATTCGTGCATGGAATAATAGAATAGGATGT\n-CGATCCTATTTTGTTGGTTTTCGGGACTCGACATAATGATAAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n-GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n->aecd442213d89e3f43949aee5040a3ed;size=50;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n-GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n-CGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT\n-GGTCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGG\n-TGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n->ea64ae1d6dddc2146105a882229c81bb;size=58;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCAGGGGGTGGTTCGCTCT\n-TCAGCGCTACTGCCCCGCTTTGCCCGTGTGATTGGCGGAGGTTTCGGGGTGCTCTTCGTTGAGTGACTCGGAGCGCCGTC\n-AGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTTTTCACGCTTGAATATTCGTGCATGGAATAATGGAATAGGA\n-ACTCGTTTCTATTTTGTTGGTTTTCGGAAATCGAGTTAATGATTAACAGGGACAATTGGGGGCATTAGTATTCAGACGAC\n-AGAGGTGAAATTCTTGGACCGTCTGAAGACTGACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCA\n->26d2046e1a0f79450d6233ef29aab44e;size=36;\n-AGCTCCA'..b'gtttactttgaaaaaattgagtgttcaaagcaggcagtcgcttgaatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaacttctgcgaaagcatttgccaaggatgttttca\n+>bd722cae807361199a837719abb82aa5;size=1;\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggacgaccggtccgccct\n+ctgggtgagtatctggctcggcctgggcatcttcttggagagcgtagctgcacttgactgtgtggtgcggtatccaggac\n+tttttactttgaggaaattagagtgtttcaagcaggcacacgccttgaatacattagcatggaataataagataggacct\n+tggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n >bdaad40d1a72de52eebf25010f5b300f;size=1;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n-CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n-ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n-AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n-TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggatgaccggtccgccca\n+ctgggtgagtatctggctcagccttggcatcttcctgaagaacgtatctgcacttgactgtgtggttcggtatttaggac\n+atttactttgaggaaattagagtgtttcaagcaagcgtacgccttgaatacattagcatggaataataagataggacctc\n+agtcctattttgttggtttctagagctgaggtaatgattgatagggatagttgggggcattcgtatttaactgtcagagg\n+tgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+>c5ffb5368376c81f723b6402ca2b84ba;size=1;\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatctgaggattagagccccaggttggccg\n+catggctacacttgtggctcagcctgcatagtcggtgattgttttggtgctcttaattgagtgccttaactgcccggcca\n+cgtttactttgaaaaaattggagtgctcaaatcaggcccaatgcctgaacagatgtgcatggaataatggaaaaggactt\n+cggttctattttgttggttttcggaacatgaagtaatgattaagagggacagacgggggcattcgtattgcggtgggaga\n+ggtgaaattcttggatcatcgcaagacgccctacagcgaaagcatttgccaagaatgtttcca\n+>c7230827efa17f5f79a837fa1d3d9e9b;size=1;\n+agctccaatagcgtatattaaagttgttgcggttaaaaaagctcgtagttggatttctgccgaggacgaccggtccgccc\n+tctgggtgagtatctggcttggcctgggcatcttcttggagaacgttactgcacttgactgtgtggtgcggtatccagga\n+cttttactttgaggaaattagagtgtttcaagcaggcatacgccttgaatacattagcatggaataataagataggacct\n+cggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n >c72b7875fe56dca4f7d9c24360650a25;size=1;\n-AGCTCTAATAGCGTATATTAATGTTGTTGCGGTTAAAAAGCTCGTGGTTGAAAGTGAAGGGTAAAACTGGATCTGGGGAA\n-ACCCATTTGCAGTTATTAGCGCGTTTTAAGGTATTCGGTTTACTTGACTTAATTGTCAAATAAGCTTAACGGATGCCTTG\n-TAGCTACTCTGATAAAATCAGAGTGCTTAAAACAAGCCTTTAAGCTTGTATATTTGTGCATAGTATAGCAAAATATGACC\n-TAAGCTAATAAAGATGGTGATTAGCCGTGGTAATGATTAAAAGGGATTGTCGGAGGCATTTGTATTTGAAAGTGAGAGGT\n-GAAATTCTATGATCTTTCAAAGACAAACTAGCGCGAAAGCATTTGCCAAGTATGTTTTCA\n+agctctaatagcgtatattaatgttgttgcggttaaaaagctcgtggttgaaagtgaagggtaaaactggatctggggaa\n+acccatttgcagttattagcgcgttttaaggtattcggtttacttgacttaattgtcaaataagcttaacggatgccttg\n+tagctactctgataaaatcagagtgcttaaaacaagcctttaagcttgtatatttgtgcatagtatagcaaaatatgacc\n+taagctaataaagatggtgattagccgtggtaatgattaaaagggattgtcggaggcatttgtatttgaaagtgagaggt\n+gaaattctatgatctttcaaagacaaactagcgcgaaagcatttgccaagtatgttttca\n >c8403bc529537d14794709f99640ac8f;size=1;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n-GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n-CGTTTACTTGAAAAAATTGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTTGG\n-TCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTG\n-AAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n+gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n+cgtttacttgaaaaaattgagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_centroids_result4.fasta --- a/test-data/clustering_centroids_result4.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_centroids_result4.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -1,7871 +1,29961 @@\n->b235271fbc8a6c9d990037857189ee9a;size=94;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGG\n-TTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGC\n-CTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAAGCAGGCTTATGCCATGAATACGTTAGCATGGAATAATGAGATAGG\n-ATTTCGGTACTATTTTGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGT\n-CAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCA\n->7e02ae2e1e404d4e7c6035a6e374d29d;size=117;\n-AGCTCCAATAGCGTATACTAATGTTGTTGCAGTTAAAAAGCTCGTAGTCGGATTTCAGTAGGCTCAGTTAAGTCTCTTCT\n-ATTGAGTTCTTTATGGGCCTGCTTCTTTGACAGAAACTTCTATGTTATTCATTTAGCGTGGGTAGCGACTGTCTCTTTTA\n-CTTTGAGAAAATTAGAGTGTTCAAAGCAGGTATTCGCCTGAATATTACTCTTGGAATAATGCTATAAGACTTTGGTTCTA\n-ATGTATTGGTGATTGGGACCAGAGTAATGATTGATAGGGACGGTTGGGGTCTTACGTACTGCAAAGCGAGAGGTGAAATT\n-CTTGGACCTTTGTATGACGAACAACTGCGAAAGCATTGGACTAGGACGTTCCCG\n->39392bbb9626a64e6663c05b70293e7c;size=118;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGACTGAGGGCGGTTTGCTTG\n-CTAGTATTACTGCCCTATAGTCCGTAGTTTTGCCAGAGGTTTCGGGGTGCTCTTAATCGAGTGTCCCGGGATGCTGGCAG\n-GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCATGGAATAATAGAATAGGAAGT\n-CGTTTCTATTTTGTTGGTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n-GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n->b970fcbdd71ad2a333f702c7ecfe7114;size=64;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGCGACCGGTCACACAC\n-TCTGTGCGTGAACTTGTGTTGTCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCC\n-ATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATGGAATAATAAGATAGGA\n-CTTCGGAACTATTTTGTTGGTTTGCGTTACGAAGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTTCATTGTCAG\n-AGGTGAAATTCTTGGATTTCTGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCA\n->a9d668eae33f9fd4484585d9fe52b05e;size=78;\n-AGCTCCAATAGCGTATACTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTTGGAGTGTGAGTGAATGGTCGATCG\n-AAAGATTGTACTGTTCGGCACACTCTTCTCTTCGGTTGCGTGTGTAGTGCCCTTAACTGAGTGCTGCACTCGACCGGAAT\n-TTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGATTATGTCTGAATATTCGTGCATGGAATAATAAAATAAGAA\n-CTTGGTTCTATTTTATTGGTTTTCGGAACTCGAGTTAATGATTAAGAGGGACAGACGGGGGCATCCGTACTCTGCCGTTA\n-GAGGTGAAATTCTTGGATCGGCGGAAGACGCGCAACTGCGAAAGCATTTGCCAAGAATGTTTTCT\n->da17e1a54e88120e294c7e68e350f47f;size=38;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGGGGGCGCAGATTGTCCGCAGA\n-CGCGTGTGCAGATGCGCCCTTTCATCCTTCTGTTAACGTCTCTTGACATTCATTTGTTGGTGGCGGGCTCAGATATTTTA\n-CCTTGAGAAAATTAGAGTGTTTCAGGCAGGCTCGCGTCGGAATACATTAGCATGGAATAATAGAATAGGACTCAGTCCTC\n-CTTTGTTGGTTTGAGGGGTCAGAGTAATGGTTAATAGGGATAGTTGGGGGCATTAGTATTTGACTGTCAGAGGTGAAATT\n-CTCGGATTTGTTAAAGACTAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->efbd11c972faa734253f779fc4eb2a64;size=61;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAACAGCCTTGAAGCGGTTAACTTT\n-GTAGTTTTACTGCTTTGTAGGCTGTGCTTTTGCTGGAGGTTTAGGGGTGCTCTTGATCGAGTGTCTCTGGATGCCAGCAG\n-GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTAAAATGCCTGAATATTCGTGCATGGAATAATAGAATAGGATGT\n-CGATCCTATTTTGTTGGTTTTCGGGACTCGACATAATGATAAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n-GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n->aecd442213d89e3f43949aee5040a3ed;size=55;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n-GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n-CGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTT\n-GGTCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGG\n-TGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n->ea64ae1d6dddc2146105a882229c81bb;size=62;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCAGGGGGTGGTTCGCTCT\n-TCAGCGCTACTGCCCCGCTTTGCCCGTGTGATTGGCGGAGGTTTCGGGGTGCTCTTCGTTGAGTGACTCGGAGCGCCGTC\n-AGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTTTTCACGCTTGAATATTCGTGCATGGAATAATGGAATAGGA\n-ACTCGTTTCTATTTTGTTGGTTTTCGGAAATCGAGTTAATGATTAACAGGGACAATTGGGGGCATTAGTATTCAGACGAC\n-AGAGGTGAAATTCTTGGACCGTCTGAAGACTGACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCA\n->26d2046e1a0f79450d6233ef29aab44e;size=45;\n-AGCTCC'..b'tggtttat\n+ggaaaagcataatgatgaatagacgcggtgggaggattttgtattaccatgtcagaggtgaaattcttggattttggaaa\n+gacaaacaaagcgaaggcattattccgacgacgccgtca\n+>bca7d1b2f489d827fc22ee3e509e096d;size=1;\n+agctccaatagcgtatattaatgttgttgcagttaaaaaagctcgtagttggattcctgacctggggtagccggtccgcc\n+ttgcaaaaggtgcgcactgagcggcctcggtcatccttgagaagagcggtcctggcattcagttgtcggggtcgggattc\n+tcgacgtttactgtgaaaaaatcagagtgttcaacgcaggcttacgccttgaatacattagcatggaataatgagatagg\n+accttggcggtctattttgttggtttgcacgccgaggtaatgattaaaagggacgttggggttcttcgtattcaattgtc\n+agaggtgaaattcttggatttatggaagacgaactgctgcgaaagcgtcgaacaaggacgttctca\n+>bd3a0cff22a32ba782f8df17e8ef6a90;size=1;\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttcggaaccggccgattggtccgtcct\n+ctggatcgtgtactgatcggtctgttcttcttcgcgaagaccgcgtgtgcccttaactgggtgggcgcgggattcgcgac\n+gtttactttgaaaaaattgagtgttcaaagcaggcagtcgcttgaatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaacttctgcgaaagcatttgccaaggatgttttca\n+>bd722cae807361199a837719abb82aa5;size=1;\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggacgaccggtccgccct\n+ctgggtgagtatctggctcggcctgggcatcttcttggagagcgtagctgcacttgactgtgtggtgcggtatccaggac\n+tttttactttgaggaaattagagtgtttcaagcaggcacacgccttgaatacattagcatggaataataagataggacct\n+tggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n >bdaad40d1a72de52eebf25010f5b300f;size=1;\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n-CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n-ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n-AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n-TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggatgaccggtccgccca\n+ctgggtgagtatctggctcagccttggcatcttcctgaagaacgtatctgcacttgactgtgtggttcggtatttaggac\n+atttactttgaggaaattagagtgtttcaagcaagcgtacgccttgaatacattagcatggaataataagataggacctc\n+agtcctattttgttggtttctagagctgaggtaatgattgatagggatagttgggggcattcgtatttaactgtcagagg\n+tgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+>c5ffb5368376c81f723b6402ca2b84ba;size=1;\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatctgaggattagagccccaggttggccg\n+catggctacacttgtggctcagcctgcatagtcggtgattgttttggtgctcttaattgagtgccttaactgcccggcca\n+cgtttactttgaaaaaattggagtgctcaaatcaggcccaatgcctgaacagatgtgcatggaataatggaaaaggactt\n+cggttctattttgttggttttcggaacatgaagtaatgattaagagggacagacgggggcattcgtattgcggtgggaga\n+ggtgaaattcttggatcatcgcaagacgccctacagcgaaagcatttgccaagaatgtttcca\n+>c7230827efa17f5f79a837fa1d3d9e9b;size=1;\n+agctccaatagcgtatattaaagttgttgcggttaaaaaagctcgtagttggatttctgccgaggacgaccggtccgccc\n+tctgggtgagtatctggcttggcctgggcatcttcttggagaacgttactgcacttgactgtgtggtgcggtatccagga\n+cttttactttgaggaaattagagtgtttcaagcaggcatacgccttgaatacattagcatggaataataagataggacct\n+cggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+>c72b7875fe56dca4f7d9c24360650a25;size=1;\n+agctctaatagcgtatattaatgttgttgcggttaaaaagctcgtggttgaaagtgaagggtaaaactggatctggggaa\n+acccatttgcagttattagcgcgttttaaggtattcggtttacttgacttaattgtcaaataagcttaacggatgccttg\n+tagctactctgataaaatcagagtgcttaaaacaagcctttaagcttgtatatttgtgcatagtatagcaaaatatgacc\n+taagctaataaagatggtgattagccgtggtaatgattaaaagggattgtcggaggcatttgtatttgaaagtgagaggt\n+gaaattctatgatctttcaaagacaaactagcgcgaaagcatttgccaagtatgttttca\n+>c8403bc529537d14794709f99640ac8f;size=1;\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n+gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n+cgtttacttgaaaaaattgagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_notmatched_result1.fasta --- a/test-data/clustering_notmatched_result1.fasta Thu Dec 17 12:53:39 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,9698 +0,0 @@\n->5b3bd3d89041bf6676e95510f0b0b8e6;size=32\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGTTGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGTGACGGGTCGGCGGGGTTGGCTTTTATCGGCCTTCACTGTCGGCTCCCACCCGTAATCGTCCGAGGTGCTCTTAAC\n-CGAGTGTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTGCTCGCCTGAATATCA\n-CAGCATGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTTCTAGACCCGAGGTAATGGTTAATAGAGACA\n-GACGGGGGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAAAGCATTTGCCA\n-AGAATGTTTTCA\n->dd9c9696486e4c8e44f64040bfd68af0;size=43\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTCCTGTCTTCGGCCGGGCGGTGCCGCC\n-CGATCAAAGGGCGTCGCACTGCTTTGGGTCGGCGGTGTCAAAGCCGTCGACTTTTAACGGTCGGACAATACCACCGGAGC\n-GGTCGCGTCGGTCCGTCGGGCCTCAGGGTTCGGCGGTCGCCGGCGCGGCCCGTAATCGTCCGAGGTGCCCTTAACAAGGT\n-GTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCCAAGCAGGTGCATACCTTCGCCTGAATAGTACAG\n-CATGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTTCTAGACCCGAGGTAATGGTTAATAGAGACGGACGG\n-GGGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAAT\n-GTTTTCA\n->fc137ae3d4f5eb20104e5d3f1490201c;size=75\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGTCGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGCGGACGGAGGGGTGTCGAGCTCTCGGGCTTTTCGCTTCTCTCCCGCCCGTAATCGTCCGAGGTGCTCTTAACCGAG\n-TGTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTATCGCCTGAATATCACAGCA\n-TGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTCTAGACCCGAGGTAATGGTTAATAGAGACAGACGGG\n-GGCATTCGTACTGCGGCGCTAGAGGTGAAATTCTTGGACCGCCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATG\n-TTTTCA\n->d9dd80f66077bd29d1569180753d1ea6;size=30\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGTCTTCGGCCGGGCGGTGCCGCC\n-TGATAATCAAGGGCGCGCACTGCTTTGGGAGCGCCGGTGTCAAAGCCGCGCTCTTTTAACGGTCGGACAATACCACCGGA\n-GTGGTGACGGGCCGGCGGGGTTGGTTCGCCCTTCACCGTCGGTCCCCACCCGTAATCGTCCGAGGTGCTCTTAACCGAGT\n-GTCTCGGGCGGCCGGTAACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGTGCTTGCTCGCCTGAATATCACAGCA\n-TGGAATGATGGAATAGGACCTCGGTCTTATTTTGTTGGTTTTCTCTAGACCCGAGGTAATGGTTAATAGAGACAGACGGG\n-GGCATTCGTACTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATG\n-TTTTCA\n->54b9859f6c86ac8d2736e3fa4d13ba87;size=95\n-AGCTCCACTAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGGATCGTATCTCGTCGGTGTCGT\n-TGGGTCATGCCTCGAAAGGGGTTGTGGTCTTTCGGCGTCTTCGGGGTCTCATCCGGAGGGTCTCTGGCTTCACGCCGGGG\n-TTTCACCTTCCGCGATGGCCCGCCGTCGCGTTTGGGTGGGTGTCCTTAATTGGATGCCCGCCGTCGAACGTGACCATTTT\n-ACCTTGAACAAATCGGAGTGCTCAACGCAGGCTCCACCACGCTCGAACGGTAGCGCATGGAATAATGGAAGAGGACCAGC\n-TTCCGCTTCTATTGGTCTCACGGAGGCAGGTAATGATCAAGAGGAACGGATGGGGGGCAGAGGTATGGCTCGGCGAGAGG\n-TGAAATTCTTGGACCCTAGCCAGACCCTCGAGAGCGAAAGCATCTGCCAAAGATGTTTTCA\n->1fcfe9045f0bc00da82d03df44a48394;size=53\n-AGCTCCACTAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGGATCGTGTCGGCGTTCTCGTGG\n-TTTCTCCTGCGGTTCTGCCGTTGGGAGTTTCCGCGGGTCGTCGGCCCTGGCGGCTAGGTCCCCACCTGATGGTGGGGTTC\n-CACCTGGCTCGTCCAGCCCGCCGTCGCGTTTGGGCGGGTGTCCTTAATTGGATGCCCGCTCTCGAACGTGGCCCGTTTAC\n-CTTGAACAAATCGGAGTGCTCAAAGCAGGCTCTACGTCGCTCGAACGGTAGCGCATGGAATAATGGAAGAGGGACCGGGC\n-TTCCGCTTTCTGTTGGTCTCACGGAGGCAGGTAATGATCAAGAGGGACGGACGGGGGCGGAGGTATGGCTCGGCGAGAGG\n-TGAAATTCTTGGACCCTAGCCAGACCCTCGAGAGCGAAAGCATCCGCCAAGGATGTTTCCA\n->3b5b50289fa657be02f8223db1ceecc1;size=38\n-AGCTCCACTAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGGATCGTACCCCCTCGGTTTTCG\n-TTGGGCCATGCCTCGCAAGGGGTTGTGGACTCGCGGGGCCGTTGGGGTCTCATCCAGAGGGTCTCTGGTATTTCGCCGGG\n-GTTTTACCTTCTGCGATGGCCCGCCGTTGTGTTTGGGTGGGTGTCCTTAATTGGATGCCCGCTTTCGAACGCGACCATTT\n-TACCTTGAACAAATCGGAGTGCTTAAAGCAGGCTCCACCACGCTCGTACGGTAGCGCATGGAATAATGGAAGAGGACCCG\n-CTTCCGCTTCTGTTGGTCTCACGGAGGCAGGTAATGATCAAGAGGAACGGACGGGGGCGGAGGTATGGCTCGGCGAGAGG\n-TGAAATTCTTGGACCCCAGCCAGACCTACGAGAGCGAAAGCATCCGCCAAGGATGTTTCCA\n->8cf694bf5517e02fc09302d0c222f492;size=32\n-AGCTCCACTAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGGATCGTGTCGGCGTTCTCGTGG\n-TTTCTCCTGCGGTTCTGCCGTTGGGAGTTTCCGCGGGTCGTCGGCCCTGGCGGCTAGGTCCCCACCTGATGGTGGGGTTC\n-CACCTGGCTCGTCCAGCCCGCCGTCGCGTTTGGGCGGGTGTCCTT'..b'GTTGCAGTTAAAAAGCTCGTAGTTGAATTTAGGAGAAAGAATTCTCCTGTCTGCA\n-CTCTTCAGGGCAAATGATATTGCTCTGGAGAACAGACTTTTACTGTGAGAAAACTAAAGTGCTCAAAGCAGGCTAACGCT\n-TGAATATTAAAGCATGGAATAATAAAATAGGACTTTATTCTATTATTGGTCATTGGATAAAGTAATGATTAACAGAAACA\n-GTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTAATTAAAGACGAACTAGTGCGAAAGCATTTGCCA\n-AGGATGTTTTCA\n->96a9caaafe30428b70835b5d473865f4;size=78\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGAGCAGGCCGGCGGTCCGCCTC\n-GCGGCGGTTACTGCCTGTCCTGCCCTACCTGCCGGTTTTCCCCCGGTGCTCTTCATTGAGTGCCTCGGGTGGCCGGAACG\n-TTTACTTTGACCATTATGGAATAATGGAATAGGACCTCGGTTCTATTTTGTTGGTCTCGATGTTGGATTAAGAGGGACAG\n-ACGGGGGCATTCGTATTACACTGTTAGAGGTGAAATTCTTGGATCGGTGTAAGACGAACTACTGCGAAAGCATTTGCCAA\n-GAATGTTTTCA\n->6e693c587ce4656374be43a0c5a0e0f1;size=33\n-AGCTCCAGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACTTGCACTCCTTTTGGAGCAGCCTAGCA\n-ACTCCGCATGTCCTTAATTGGATGGCGGAGACCTGCGGGCCCTTTACCTTGAGAAAATTAGAGTGTTTAAGGCAGGCCAC\n-GCCTGAATACTGCAGCTGGGAATAATGCATCACGACTGTCTTGGCGAGGCAGCTCTACACTTTTAATAGGAACGGTTGGG\n-GGCATTCGTACTCAGCAGTCAGAGGTGAAATTCTTGGATTTGCTGAAGACGGACTAGTGCGAAAGCATTTGCCAAGGATG\n-TTTTCA\n->6d23e3b9b8db42f3ee64c4b8b3b3e016;size=71\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTTTGCCAGAGGTTTCGGGGTGCTCTTAATCGA\n-GTGTCCCGGGATGCTGGCAGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCAT\n-GGAATAATAGAATAGGAAGTCGTTTCTATTTTGTTGGTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGC\n-ATTTGTATTCAAACGACAGAGGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTT\n-TCA\n->ea0e653d3c6c63a34d2fd51697955280;size=56\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCAAGGTGGAGATGGGGTTTACTCCG\n-TTGAAGCTTATCAGTCCGAAAGGACTGTTACTGTGAGAAAATTAGAGTGTTTCAAGCAGGCAATTGCAGGAATACATTAG\n-CATGGAATAACGAATGTGTCTAGAATCTTGGTTAATTCTAGATTACGATTAATAGGGACAGTTGGGGGCATTAGTATTTA\n-ATTGTCAGAGGTGAAATTCTTGGATTTGTTAAAGACTAACCTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->90ded2932eac98a8cb2a92bf4d04e0bf;size=120\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTAGATAAGTGGGTACTTGTACTTT\n-GCTTGTCTACCAGTCTTAGACTGTTACTGTGAGAAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCAT\n-GGAATAACGAATGTGTCTGGAATATTGGTTAATTCTAGATTACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->b858b313f1df62306272d6837665a1ff;size=65\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCAAGGATCTCAGCGTGGATACACGT\n-TTGAATCCTACCAGTCTTTGACTGTTACTGTGAGAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCAT\n-GGAATAACGAATGTGTCTAGAATCTTGGTTAATTCTAGAATACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->46c166a8a872048e3b43afc09a7ff4e4;size=64\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTAGATAAGTGGGTACTTGTACTTT\n-GCTTGTCTACCAGTCATAGACTGTTACTGTGAGAAAATTAGAGTGTTTCAAGCAGGCTGTTGCAGGAATACATTAGCATG\n-GAATAACGAATGTGTCTGGAATATTGGTTAATTCTAGATTACGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATTG\n-TCAGAGGTGAAATTCTTGGATTTATTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTTCA\n->5f6b41eee25b85749d6079c416331706;size=52\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCAAGAGACGCATCTGGGGATACCGG\n-TATGCTCTCTACGGTCTCAGGACTGTTACTGTGAGAAAATTAGAGTGTTCAAAGCAGGCTATTGCAGGAATATATTAGCA\n-TGGAATAACGAATGTGTTTACAATTTGGTTAATTGTAGATTTCAATTAATAGGGACAGTTGGGGGCATTAGTATTTAATT\n-GTCAGAGGTGAAATTCTTGGATTAGTTAAAGACTAACGTATGCGAAAGCATTTGCCAAGGATGTTTTCA\n->8eece1bfb387537588b482297f3a3861;size=61\n-AGCTCTTTTTGTGTACTTTAAAGTTACTTTGTTTGAAAAGTTCGTCGTCTGTGTTGTTGTTTGAGTTGATTTTTCGAAAG\n-AAAGTAGTACTGTGAGAAAATGGGTTTGTTTCAGATGACTTGTTAGCATGGTATATTTGTGTGTATGTTTAGCGATTGTT\n-TTGTTAAAAATAAGACAAGAAGAGTGGTCGGGGGTGCTCGTATTTGTGGGCCAGAGGTGAAATTCTTGGATTCCACAAGG\n-ACGTCCAATCGCGCAAGCATTCGCCCAGGACACGTCTG\n->cbd30db2f4ec28a4d991954efbe58ec7;size=43\n-ATACCCCTTTATGGAGATGGATTAAACATCCGCGATTGGCTTTATGTTGAAGACCATGTGGATGCATTACTCCTAGCAGC\n-CTGTCGAGGAACATCTGGACGCAGCTATTGCGTTGGTGGCCATGGTGAAAAAACGAATCAAGAGGTGGTCAATGCAATCT\n-GCCATCAGT\n->ddc6ea88330faf28ef92ee4e8b1380cf;size=38\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTTTCA\n->ce291c2620b3cd6a0b627ca586ddd4e9;size=40\n-TAAAGTAGCAACTGAACGTAGAATAGGGAAGAAGCTACGAAGAGAGAATA\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_notmatched_result2.fasta --- a/test-data/clustering_notmatched_result2.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_notmatched_result2.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -1,8256 +1,29973 @@\n >b235271fbc8a6c9d990037857189ee9a;size=22254\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGG\n-TTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGC\n-CTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAAGCAGGCTTATGCCATGAATACGTTAGCATGGAATAATGAGATAGG\n-ATTTCGGTACTATTTTGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGT\n-CAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggtgcattccactggcctattgg\n+ttaactccaacttggctcatttggaatacgccatctttaggcagacccgtcgtggcattaggttgtcgtgatggttacgc\n+ctatcgtttactgtgaagaaattagggtgttcaaagcaggcttatgccatgaatacgttagcatggaataatgagatagg\n+atttcggtactattttgttggtttgtgtacggaaataatgattaacaggaacagtgttgtgggtattcgtatttcgttgt\n+cagaggtgaaattcttggatttacgaaagacgaacgactgcgaaagcatttaccaaggatgttttca\n >7e02ae2e1e404d4e7c6035a6e374d29d;size=20728\n-AGCTCCAATAGCGTATACTAATGTTGTTGCAGTTAAAAAGCTCGTAGTCGGATTTCAGTAGGCTCAGTTAAGTCTCTTCT\n-ATTGAGTTCTTTATGGGCCTGCTTCTTTGACAGAAACTTCTATGTTATTCATTTAGCGTGGGTAGCGACTGTCTCTTTTA\n-CTTTGAGAAAATTAGAGTGTTCAAAGCAGGTATTCGCCTGAATATTACTCTTGGAATAATGCTATAAGACTTTGGTTCTA\n-ATGTATTGGTGATTGGGACCAGAGTAATGATTGATAGGGACGGTTGGGGTCTTACGTACTGCAAAGCGAGAGGTGAAATT\n-CTTGGACCTTTGTATGACGAACAACTGCGAAAGCATTGGACTAGGACGTTCCCG\n+agctccaatagcgtatactaatgttgttgcagttaaaaagctcgtagtcggatttcagtaggctcagttaagtctcttct\n+attgagttctttatgggcctgcttctttgacagaaacttctatgttattcatttagcgtgggtagcgactgtctctttta\n+ctttgagaaaattagagtgttcaaagcaggtattcgcctgaatattactcttggaataatgctataagactttggttcta\n+atgtattggtgattgggaccagagtaatgattgatagggacggttggggtcttacgtactgcaaagcgagaggtgaaatt\n+cttggacctttgtatgacgaacaactgcgaaagcattggactaggacgttcccg\n >39392bbb9626a64e6663c05b70293e7c;size=11535\n-AGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGACTGAGGGCGGTTTGCTTG\n-CTAGTATTACTGCCCTATAGTCCGTAGTTTTGCCAGAGGTTTCGGGGTGCTCTTAATCGAGTGTCCCGGGATGCTGGCAG\n-GTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTATTACGCCTGAATATTCGTGCATGGAATAATAGAATAGGAAGT\n-CGTTTCTATTTTGTTGGTTTTCGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGCATTTGTATTCAAACGACAGA\n-GGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCA\n+agctccaatagcgtatattaaagttgttgtggttaaaaagctcgtagttggatctcggcggactgagggcggtttgcttg\n+ctagtattactgccctatagtccgtagttttgccagaggtttcggggtgctcttaatcgagtgtcccgggatgctggcag\n+gtttactttgaaaaaattagagtgctcaaagcaggctattacgcctgaatattcgtgcatggaataatagaataggaagt\n+cgtttctattttgttggttttcggaaatcgacttaatgattaatagggacagtcgggggcatttgtattcaaacgacaga\n+ggtgaaattcttggaccgtttgaagacaaactactgcgaaagcatttgccaagaatgttttca\n >b970fcbdd71ad2a333f702c7ecfe7114;size=10907\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGCGACCGGTCACACAC\n-TCTGTGCGTGAACTTGTGTTGTCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCC\n-ATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATGGAATAATAAGATAGGA\n-CTTCGGAACTATTTTGTTGGTTTGCGTTACGAAGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTTCATTGTCAG\n-AGGTGAAATTCTTGGATTTCTGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatttctggcaggagcgaccggtcacacac\n+tctgtgcgtgaacttgtgttgtctctggccatccttggggagatcctgtttggcattaagttgtcgggcaggggataccc\n+atcgtttactgtgaaaaaattagagtgtttaaagcaggcttatgccgttgaatatattagcatggaataataagatagga\n+cttcggaactattttgttggtttgcgttacgaagtaatgattaatagggacagttgggggtattcgtatttcattgtcag\n+aggtgaaattcttggatttctgaaagacgaactactgcgaaagcatttaccaaggatgttttca\n >a9d668eae33f9fd4484585d9fe52b05e;size=8638\n-AGCTCCAATAGCGTATACTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTTGGAGTGTGAGTGAATGGTCGATCG\n-AAAGATTGTACTGTTCGGCACACTCTTCTCTTCGGTTGCGTGTGTAGTGCCCTTAACTGAGTGCTGCACTCGACCGGAAT\n-TTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGATTATGTCTGAATATTCGTGCATGGAATAATAAAATAAGAA\n-CTTGGTTCTATTTTATTGGTTTTCGGAACTCGAGTTAATGATTAAGAGGGACAGACGGGGGCATCCGTACTCTGCCGTTA\n-GAGGTGAAATTCTTGGATCGGCGGAAGACGCGCAACTGCGAAAGCATTTGCCAAGAATGTTTTCT\n+agctccaatagcgtatactaaagttgttgcggttaaaaagctcgtagttggatcttggagtgtgagtgaatggtcgatcg\n+aaagattgtactgttcggcacactcttctcttcggttgcgtgtgtagtgcccttaactgagtgctgcactcgaccggaat\n+ttttaccttgaaaaaattagagtgttcaaagcagacctgattatgtctgaa'..b'gtttactttgaaaaaattgagtgttcaaagcaggcagtcgcttgaatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaacttctgcgaaagcatttgccaaggatgttttca\n+>bd722cae807361199a837719abb82aa5;size=29\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggacgaccggtccgccct\n+ctgggtgagtatctggctcggcctgggcatcttcttggagagcgtagctgcacttgactgtgtggtgcggtatccaggac\n+tttttactttgaggaaattagagtgtttcaagcaggcacacgccttgaatacattagcatggaataataagataggacct\n+tggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n >bdaad40d1a72de52eebf25010f5b300f;size=29\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCTGAGGATGACCGGTCCGCCCA\n-CTGGGTGAGTATCTGGCTCAGCCTTGGCATCTTCCTGAAGAACGTATCTGCACTTGACTGTGTGGTTCGGTATTTAGGAC\n-ATTTACTTTGAGGAAATTAGAGTGTTTCAAGCAAGCGTACGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCTC\n-AGTCCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGATTGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGG\n-TGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcggttaaaaagctcgtagttggatttctgctgaggatgaccggtccgccca\n+ctgggtgagtatctggctcagccttggcatcttcctgaagaacgtatctgcacttgactgtgtggttcggtatttaggac\n+atttactttgaggaaattagagtgtttcaagcaagcgtacgccttgaatacattagcatggaataataagataggacctc\n+agtcctattttgttggtttctagagctgaggtaatgattgatagggatagttgggggcattcgtatttaactgtcagagg\n+tgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n+>c5ffb5368376c81f723b6402ca2b84ba;size=29\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggatctgaggattagagccccaggttggccg\n+catggctacacttgtggctcagcctgcatagtcggtgattgttttggtgctcttaattgagtgccttaactgcccggcca\n+cgtttactttgaaaaaattggagtgctcaaatcaggcccaatgcctgaacagatgtgcatggaataatggaaaaggactt\n+cggttctattttgttggttttcggaacatgaagtaatgattaagagggacagacgggggcattcgtattgcggtgggaga\n+ggtgaaattcttggatcatcgcaagacgccctacagcgaaagcatttgccaagaatgtttcca\n+>c7230827efa17f5f79a837fa1d3d9e9b;size=29\n+agctccaatagcgtatattaaagttgttgcggttaaaaaagctcgtagttggatttctgccgaggacgaccggtccgccc\n+tctgggtgagtatctggcttggcctgggcatcttcttggagaacgttactgcacttgactgtgtggtgcggtatccagga\n+cttttactttgaggaaattagagtgtttcaagcaggcatacgccttgaatacattagcatggaataataagataggacct\n+cggttctattttgttggtttctagagctgaggtaatgattaatagggatagttgggggcattcgtatttaactgtcagag\n+gtgaaattcttggatttgttaaagacggactactgcgaaagcatttgccaaggatgttttca\n >c72b7875fe56dca4f7d9c24360650a25;size=29\n-AGCTCTAATAGCGTATATTAATGTTGTTGCGGTTAAAAAGCTCGTGGTTGAAAGTGAAGGGTAAAACTGGATCTGGGGAA\n-ACCCATTTGCAGTTATTAGCGCGTTTTAAGGTATTCGGTTTACTTGACTTAATTGTCAAATAAGCTTAACGGATGCCTTG\n-TAGCTACTCTGATAAAATCAGAGTGCTTAAAACAAGCCTTTAAGCTTGTATATTTGTGCATAGTATAGCAAAATATGACC\n-TAAGCTAATAAAGATGGTGATTAGCCGTGGTAATGATTAAAAGGGATTGTCGGAGGCATTTGTATTTGAAAGTGAGAGGT\n-GAAATTCTATGATCTTTCAAAGACAAACTAGCGCGAAAGCATTTGCCAAGTATGTTTTCA\n+agctctaatagcgtatattaatgttgttgcggttaaaaagctcgtggttgaaagtgaagggtaaaactggatctggggaa\n+acccatttgcagttattagcgcgttttaaggtattcggtttacttgacttaattgtcaaataagcttaacggatgccttg\n+tagctactctgataaaatcagagtgcttaaaacaagcctttaagcttgtatatttgtgcatagtatagcaaaatatgacc\n+taagctaataaagatggtgattagccgtggtaatgattaaaagggattgtcggaggcatttgtatttgaaagtgagaggt\n+gaaattctatgatctttcaaagacaaactagcgcgaaagcatttgccaagtatgttttca\n >c8403bc529537d14794709f99640ac8f;size=29\n-AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTCGGAGCAGGTTGATTGGTCCGTCCT\n-GAAGGATGCTGTACTGATCGGTCTGCTCTTCTTCGCGAAGACTCCGTGTGCCCTTAACTGGGTGGGCGAAGGATTCGCGA\n-CGTTTACTTGAAAAAATTGAGTGTTCAAAGCAGGCAATCGCTTGGATATCTCAGCATGGAATAATAGAATAGGACTTTGG\n-TCTTATTTTGTTGGTTTCCGAGACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTATTTCATTGTCAGAGGTG\n-AAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCA\n+agctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttggacctcggagcaggttgattggtccgtcct\n+gaaggatgctgtactgatcggtctgctcttcttcgcgaagactccgtgtgcccttaactgggtgggcgaaggattcgcga\n+cgtttacttgaaaaaattgagtgttcaaagcaggcaatcgcttggatatctcagcatggaataatagaataggactttgg\n+tcttattttgttggtttccgagaccgaagtaatgattaatagggacagttgggggcattcgtatttcattgtcagaggtg\n+aaattcttggatttatgaaagacgaactactgcgaaagcatttgccaaggatgttttca\n' |
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/clustering_uc_result3.uc --- a/test-data/clustering_uc_result3.uc Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/clustering_uc_result3.uc Tue Mar 01 07:07:03 2016 -0500 |
| b |
| b'@@ -13,6362 +13,9972 @@\n S\t12\t382\t*\t*\t*\t*\t*\tde935b7625d937ebe744b3125cfd1dfc;size=3868\t*\n S\t13\t376\t*\t*\t*\t*\t*\t7e3fa204e95db351839d719215fba508;size=3689\t*\n S\t14\t381\t*\t*\t*\t*\t*\t78951b2d4ca30531381672a30be0978a;size=3655\t*\n-H\t0\t388\t99.7\t+\t0\t0\t319MD68M\tb7ffa8f46cb16542d89dc5293ade2098;size=3629\tb235271fbc8a6c9d990037857189ee9a;size=22254\n-S\t15\t382\t*\t*\t*\t*\t*\t721460e46e8804111d74cb730340492f;size=3538\t*\n+S\t15\t388\t*\t*\t*\t*\t*\tb7ffa8f46cb16542d89dc5293ade2098;size=3629\t*\n+S\t16\t382\t*\t*\t*\t*\t*\t721460e46e8804111d74cb730340492f;size=3538\t*\n 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|
| b |
| diff -r f29e21388219 -r 4258854759ba test-data/sorting_result4.fasta --- a/test-data/sorting_result4.fasta Thu Dec 17 12:53:39 2015 -0500 +++ b/test-data/sorting_result4.fasta Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,48 +1,48 @@ ->sp|Q66125|2B_CMVQ Suppressor of silencing 2b OS=Cucumber mosaic virus (strain Q) GN=ORF2b PE=1 SV=1 +>sp|Q66125|2B_CMVQ Suppressor of silencing 2b OS=Cucumber mosaic virus (strain Q) GN=ORF2b PE=1 SV=1;size=1; MDVTVVVSTADHANVKRRRRRSHVRNRRARGYKSSRARSARMHGVDVDWDVVRSSVTSVSYSDDTDWAGNWAGS ->sp|P0DMP9|APOC3_PANTA Apolipoprotein C-III OS=Panthera tigris altaica GN=APOC3 PE=3 SV=1 +>sp|P0DMP9|APOC3_PANTA Apolipoprotein C-III OS=Panthera tigris altaica GN=APOC3 PE=3 SV=1;size=1; MSRVVTAVASARATGDSGMGYVHATKTADTTTMRVAARDWVTGRSSKDYWSTTGKSGWDSTAVTTASAK ->sp|Q89681|DR4_HHV6U Uncharacterized protein DR4 OS=Human herpesvirus 6A (strain Uganda-1102) GN=DR4L PE=4 SV=1 +>sp|Q89681|DR4_HHV6U Uncharacterized protein DR4 OS=Human herpesvirus 6A (strain Uganda-1102) GN=DR4L PE=4 SV=1;size=1; MRGTRRGSGGWSGARYAGSVAASDRSDTRATTSAYRHTHAASGARTRAHARHARHRVTVHVVAGVCARV ->sp|Q91G65|032R_IIV6 Uncharacterized protein 032R OS=Invertebrate iridescent virus 6 GN=IIV6-032R PE=4 SV=1 +>sp|Q91G65|032R_IIV6 Uncharacterized protein 032R OS=Invertebrate iridescent virus 6 GN=IIV6-032R PE=4 SV=1;size=1; MGVYKCYNKKKVGVAVKRYVTKKSYKTANSNADSYNCRKCCKAKGCCDRYWKTVKNDKCKKGVVVYY ->sp|B3MQ24|ENY2_DROAN Enhancer of yellow 2 transcription factor OS=Drosophila ananassae GN=e(y)2 PE=3 SV=1 +>sp|B3MQ24|ENY2_DROAN Enhancer of yellow 2 transcription factor OS=Drosophila ananassae GN=e(y)2 PE=3 SV=1;size=1; MTVSNTVDYTVSGDRSKKDCNRTCGWRDVRCRTKGTGNSTVTVTKARTVDAVKKMKRTTNSDA ->sp|P20194|A100_SSV1 Uncharacterized protein A-100 OS=Sulfolobus spindle-shape virus 1 GN=a100 PE=1 SV=1 +>sp|P20194|A100_SSV1 Uncharacterized protein A-100 OS=Sulfolobus spindle-shape virus 1 GN=a100 PE=1 SV=1;size=1; MVSTRKKNSVYTGRKYGSYHKDDKKYADNKNRKRYVYSVDDAKAKATAKSVD ->tr|M0KT65|M0KT65_9EURY 50S ribosomal protein L37e OS=Haloarcula amylolytica JCM 13557 GN=rpl37e PE=3 SV=1 +>tr|M0KT65|M0KT65_9EURY 50S ribosomal protein L37e OS=Haloarcula amylolytica JCM 13557 GN=rpl37e PE=3 SV=1;size=1; MTGAGTSGKKNTTTHTKCRRCGKSYHTKKKVCSSCGGKSAKRRDYWSKAG ->tr|M0MK44|M0MK44_9EURY 50S ribosomal protein L37e OS=Halococcus saccharolyticus DSM 5350 GN=rpl37e PE=3 SV=1 +>tr|M0MK44|M0MK44_9EURY 50S ribosomal protein L37e OS=Halococcus saccharolyticus DSM 5350 GN=rpl37e PE=3 SV=1;size=1; MTGSGTSGKKNKTVHVKCRRCGASYHKTKKVCASCGGKSAKRRDYAWKAG ->tr|M0D8K9|M0D8K9_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum terrestre JCM 10247 GN=rps14P PE=3 SV=1 +>tr|M0D8K9|M0D8K9_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum terrestre JCM 10247 GN=rps14P PE=3 SV=1;size=1; MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0F5C2|M0F5C2_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum hochstenium ATCC 700873 GN=rps14P PE=3 SV=1 +>tr|M0F5C2|M0F5C2_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum hochstenium ATCC 700873 GN=rps14P PE=3 SV=1;size=1; MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0NIQ6|M0NIQ6_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum lipolyticum DSM 21995 GN=rps14P PE=3 SV=1 +>tr|M0NIQ6|M0NIQ6_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum lipolyticum DSM 21995 GN=rps14P PE=3 SV=1;size=1; MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0PIT7|M0PIT7_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum arcis JCM 13916 GN=rps14P PE=3 SV=1 +>tr|M0PIT7|M0PIT7_9EURY 30S ribosomal protein S14 type Z OS=Halorubrum arcis JCM 13916 GN=rps14P PE=3 SV=1;size=1; MSANNDTGHAAKRTDSRHTCRRCDRGVGKYDNCRCRVARDMGKYS ->tr|M0MEH5|M0MEH5_9EURY 30S ribosomal protein S14 type Z OS=Halococcus saccharolyticus DSM 5350 GN=rps14P PE=3 SV=1 +>tr|M0MEH5|M0MEH5_9EURY 30S ribosomal protein S14 type Z OS=Halococcus saccharolyticus DSM 5350 GN=rps14P PE=3 SV=1;size=1; MSSTDTGHATKRTGDCRCGRKGVGKYDWCRCRARGMGRKYK ->tr|L9WHT8|L9WHT8_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum bangense JCM 10635 GN=rplX PE=3 SV=1 +>tr|L9WHT8|L9WHT8_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum bangense JCM 10635 GN=rplX PE=3 SV=1;size=1; MSTVTGKSRDGYSTTDANNVARHVYSGSHGKRSDVSA ->tr|M0KH83|M0KH83_9EURY 50S ribosomal protein L18Ae OS=Haloarcula amylolytica JCM 13557 GN=rplX PE=3 SV=1 +>tr|M0KH83|M0KH83_9EURY 50S ribosomal protein L18Ae OS=Haloarcula amylolytica JCM 13557 GN=rplX PE=3 SV=1;size=1; MSTYTVRGSARDGKVDANNVARVYSDGSHNKRTTVAA ->tr|L9WBT3|L9WBT3_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum sulfidifaciens JCM 14089 GN=rplX PE=3 SV=1 +>tr|L9WBT3|L9WBT3_9EURY 50S ribosomal protein L18Ae OS=Natronorubrum sulfidifaciens JCM 14089 GN=rplX PE=3 SV=1;size=1; MSTVTGKSRDGYATTDANNVARHVSGSHGKRTDVS ->tr|W9PMP6|W9PMP6_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. pisi HDV247 GN=FOVG_07074 PE=4 SV=1 +>tr|W9PMP6|W9PMP6_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. pisi HDV247 GN=FOVG_07074 PE=4 SV=1;size=1; MTNAGRSKACDCKRKVGCSRYK ->tr|X0LYM3|X0LYM3_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. vasinfectum 25433 GN=FOTG_17987 PE=4 SV=1 +>tr|X0LYM3|X0LYM3_FUSOX Uncharacterized protein OS=Fusarium oxysporum f. sp. vasinfectum 25433 GN=FOTG_17987 PE=4 SV=1;size=1; MTNAGRSKACDCKRKVGCSRYK ->tr|H3BPV3|H3BPV3_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=4 SV=1 +>tr|H3BPV3|H3BPV3_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=4 SV=1;size=1; MATDSWAAVDAAASRTSYSTS ->tr|H0ACG9|H0ACG9_HALSG Uncharacterized protein OS=Haloredivivus sp. (strain G17) GN=HRED_08116 PE=4 SV=1 +>tr|H0ACG9|H0ACG9_HALSG Uncharacterized protein OS=Haloredivivus sp. (strain G17) GN=HRED_08116 PE=4 SV=1;size=1; MRVRVDRVGVVGGGTKKRGV ->tr|N6VV02|N6VV02_9EURY Uncharacterized protein (Fragment) OS=Thermoplasmatales archaeon SCGC AB-539-C06 GN=MBGDC06_00209 PE=4 SV=1 +>tr|N6VV02|N6VV02_9EURY Uncharacterized protein (Fragment) OS=Thermoplasmatales archaeon SCGC AB-539-C06 GN=MBGDC06_00209 PE=4 SV=1;size=1; KRGAHGKMNGSVKTTMGSGR ->tr|Q53RS6|Q53RS6_HUMAN Putative uncharacterized protein ALS2CR3 (Fragment) OS=Homo sapiens GN=ALS2CR3 PE=4 SV=1 +>tr|Q53RS6|Q53RS6_HUMAN Putative uncharacterized protein ALS2CR3 (Fragment) OS=Homo sapiens GN=ALS2CR3 PE=4 SV=1;size=1; MSSNATSTGNMNSNHRDSST ->tr|V9H0X7|V9H0X7_NEUCS Neurospora crassa DNA for RNA polymerase I second-largest subunit OS=Neurospora crassa PE=4 SV=1 +>tr|V9H0X7|V9H0X7_NEUCS Neurospora crassa DNA for RNA polymerase I second-largest subunit OS=Neurospora crassa PE=4 SV=1;size=1; MAHSDNRDTADYGGAHAA ->tr|Q9BZF8|Q9BZF8_HUMAN NF-E2-related factor 2 (Fragment) OS=Homo sapiens PE=2 SV=1 +>tr|Q9BZF8|Q9BZF8_HUMAN NF-E2-related factor 2 (Fragment) OS=Homo sapiens PE=2 SV=1;size=1; MMDGSDMDDWRDD |
| b |
| diff -r f29e21388219 -r 4258854759ba tool_dependencies.xml --- a/tool_dependencies.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/tool_dependencies.xml Tue Mar 01 07:07:03 2016 -0500 |
| b |
| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vsearch" version="1.1.3"> - <repository changeset_revision="559454eab468" name="package_vsearch_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vsearch" version="1.9.7"> + <repository changeset_revision="99c947b9fb31" name="package_vsearch_1_9_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |
| b |
| diff -r f29e21388219 -r 4258854759ba vsearch_macros.xml --- a/vsearch_macros.xml Thu Dec 17 12:53:39 2015 -0500 +++ b/vsearch_macros.xml Tue Mar 01 07:07:03 2016 -0500 |
| [ |
| @@ -1,9 +1,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.1.3">vsearch</requirement> + <requirement type="package" version="1.9.7">vsearch</requirement> </requirements> </xml> + <token name="@VERSION@">1.9.7</token> + <xml name="version_command"> <version_command>vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'</version_command> </xml> @@ -166,7 +168,6 @@ </param> </xml> - <token name="@VERSION@">1.1.3</token> <token name="@EXTERNAL_DOCUMENTATION@"> <![CDATA[ |