| Previous changeset 13:4d97434ea0fb (2021-07-15) Next changeset 15:75a08e10cc76 (2024-09-02) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit e10d34b547557b2bd4f0be69e31204bd5703e422" |
|
modified:
macros.xml test-data/test_bam_01_output_a.bam test-data/test_bed_02_input_a.bed test-data/test_bed_02_output_a__all.bed test-data/test_bed_02_output_a__only_fails.bed test-data/test_vcf_01_input.vcf test-data/test_vcf_01_output.vcf.unmap |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 macros.xml --- a/macros.xml Thu Jul 15 16:17:47 2021 +0000 +++ b/macros.xml Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -6,7 +6,7 @@ <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.5.2</token> + <token name="@TOOL_VERSION@">0.6.1</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="stdio"> <stdio> |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_bam_01_output_a.bam |
| b |
| Binary file test-data/test_bam_01_output_a.bam has changed |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_bed_02_input_a.bed --- a/test-data/test_bed_02_input_a.bed Thu Jul 15 16:17:47 2021 +0000 +++ b/test-data/test_bed_02_input_a.bed Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -1,5 +1,5 @@ -chr1 100 10000 -chr2 100 10000 -chr3 100 10000 -chr4 8941700 8947200 -chr5 1 100000000 \ No newline at end of file +1 100 10000 +2 100 10000 +3 100 10000 +4 8941700 8947200 +5 1 100000000 |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_bed_02_output_a__all.bed --- a/test-data/test_bed_02_output_a__all.bed Thu Jul 15 16:17:47 2021 +0000 +++ b/test-data/test_bed_02_output_a__all.bed Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -1,5 +1,5 @@ -chr1 100 10000 Unmap -chr2 100 10000 Unmap -chr3 100 10000 Unmap -chr4 8941700 8947200 Unmap -chr5 1 100000000 Unmap +1 100 10000 Unmap +2 100 10000 Unmap +3 100 10000 Unmap +4 8941700 8947200 Unmap +5 1 100000000 Unmap |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_bed_02_output_a__only_fails.bed --- a/test-data/test_bed_02_output_a__only_fails.bed Thu Jul 15 16:17:47 2021 +0000 +++ b/test-data/test_bed_02_output_a__only_fails.bed Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -1,5 +1,5 @@ -chr1 100 10000 Unmap -chr2 100 10000 Unmap -chr3 100 10000 Unmap -chr4 8941700 8947200 Unmap -chr5 1 100000000 Unmap +1 100 10000 Unmap +2 100 10000 Unmap +3 100 10000 Unmap +4 8941700 8947200 Unmap +5 1 100000000 Unmap |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_vcf_01_input.vcf --- a/test-data/test_vcf_01_input.vcf Thu Jul 15 16:17:47 2021 +0000 +++ b/test-data/test_vcf_01_input.vcf Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -2,6 +2,7 @@ ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype"> ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities"> ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods"> +##contig=<ID=1,length=195471971> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002 1 10 rs11449 G A . PASS . GT 0/0 0/1 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0 |
| b |
| diff -r 4d97434ea0fb -r 42b239a32349 test-data/test_vcf_01_output.vcf.unmap --- a/test-data/test_vcf_01_output.vcf.unmap Thu Jul 15 16:17:47 2021 +0000 +++ b/test-data/test_vcf_01_output.vcf.unmap Thu Jan 20 04:32:52 2022 +0000 |
| b |
| @@ -2,5 +2,6 @@ ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype"> ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities"> ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods"> +##contig=<ID=1,length=195471971> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0 Fail(REF==ALT) |