| Previous changeset 9:ef2ad746b589 (2021-06-06) Next changeset 11:602de62d995b (2023-01-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 21f3eae641dd20a0f8724e0a05910396df8d028f |
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modified:
goseq.xml |
| b |
| diff -r ef2ad746b589 -r 43798b4caee0 goseq.xml --- a/goseq.xml Sun Jun 06 22:47:36 2021 +0000 +++ b/goseq.xml Thu Jun 09 13:01:48 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="goseq" name="goseq" version="@VERSION@+@GALAXY_VERSION@"> +<tool id="goseq" name="goseq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> <description>tests for overrepresented gene categories</description> <xrefs> <xref type="bio.tools">goseq</xref> @@ -10,18 +10,20 @@ <edam_operation>operation_2436</edam_operation> </edam_operations> <macros> - <token name="@VERSION@">1.44.0</token> - <token name="@GALAXY_VERSION@">galaxy0</token> + <token name="@TOOL_VERSION@">1.44.0</token> + <token name="@VERSION_SUFFIX@">2</token> </macros> <requirements> - <requirement type="package" version="@VERSION@">bioconductor-goseq</requirement> + <requirement type="package" version="@TOOL_VERSION@">bioconductor-goseq</requirement> <requirement type="package" version="3.13.0">bioconductor-org.hs.eg.db</requirement> <requirement type="package" version="3.13.0">bioconductor-org.dm.eg.db</requirement> <requirement type="package" version="3.13.0">bioconductor-org.dr.eg.db</requirement> <requirement type="package" version="3.13.0">bioconductor-org.mm.eg.db</requirement> - <requirement type="package" version="1.0.6">r-dplyr</requirement> - <requirement type="package" version="3.3.3">r-ggplot2</requirement> - <requirement type="package" version="1.6.6">r-optparse</requirement> + <requirement type="package" version="3.13.0">bioconductor-org.rn.eg.db</requirement> + <requirement type="package" version="1.0.9">r-dplyr</requirement> + <requirement type="package" version="3.3.6">r-ggplot2</requirement> + <requirement type="package" version="1.7.1">r-optparse</requirement> + <requirement type="package" version="1.1.1o">openssl</requirement> </requirements> <stdio> <regex match="Execution halted" @@ -104,6 +106,7 @@ <option value="mm10">Mouse (mm10)</option> <option value="dm6">Fruit fly (dm6)</option> <option value="danRer10">Zebrafish (danRer10)</option> + <option value="rn6">Rat (rn6)</option> </param> <param name="gene_id" type="select" label="Select Gene ID format" help="Supported Gene IDs to automatically fetch categories should either be Entrez, Ensembl, or gene symbols."> <option value="ensGene">Ensembl Gene ID</option> @@ -523,4 +526,4 @@ <citations> <citation type="doi">10.1186/gb-2010-11-2-r14</citation> </citations> -</tool> \ No newline at end of file +</tool> |