| Next changeset 1:a4c47051ab68 (2014-12-13) |
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Commit message:
Imported from capsule None |
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added:
fileinfo.xml tool_dependencies.xml |
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| diff -r 000000000000 -r 43d52bf6cd3f fileinfo.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fileinfo.xml Sat Dec 13 17:19:14 2014 -0500 |
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| @@ -0,0 +1,37 @@ +<tool id="fileinfo" name="Retrieve File Information"> + <description>for supported data formats.</description> + <requirements> + <requirement type="package" version="0.1.5">mimodd</requirement> + </requirements> + <version_command>mimodd version -q</version_command> + <command> + mimodd info $ifile -o $outputfile --verbose --oformat $oformat + </command> + + <inputs> + <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" /> + <param name="oformat" type="select" label="output format"> + <option value="txt">text</option> + <option value="html">html</option> + </param> + </inputs> + + <outputs> + <data name="outputfile" format="txt" label="Sample Info on ${on_string}"> + <change_format> + <when input="oformat" value="html" format="html"/> + </change_format> + </data> + </outputs> + +<help> +.. class:: infomark + + **What it does** + +The tool inspects the input file and generates a report summarizing its contents. + +It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them. + +</help> +</tool> |
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| diff -r 000000000000 -r 43d52bf6cd3f tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Dec 13 17:19:14 2014 -0500 |
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| @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="mimodd" version="0.1.5"> + <repository name="package_mimodd_0_1_5" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency> |