| Previous changeset 18:c772497b2c32 (2021-03-15) Next changeset 20:91e0f03268ca (2021-09-08) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 27ea73be9aede1e0939ecd7c5f560ac2a630869a" |
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modified:
rg_rnaStar.xml |
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| diff -r c772497b2c32 -r 44959aa06aeb rg_rnaStar.xml --- a/rg_rnaStar.xml Mon Mar 15 13:46:07 2021 +0000 +++ b/rg_rnaStar.xml Fri Jul 02 20:18:29 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="20.01" license="MIT"> +<tool id="rna_star" name="RNA STAR" version="@VERSION@+galaxy0" profile="20.01" license="MIT"> <description>Gapped-read mapper for RNA-seq data</description> <xrefs> <xref type="bio.tools">star</xref> @@ -210,6 +210,7 @@ --outBAMsortingThreadN \${GALAXY_SLOTS:-4} --outBAMsortingBinsN $perf.outBAMsortingBinsN + --winAnchorMultimapNmax $perf.winAnchorMultimapNmax --limitBAMsortRAM \$((\${GALAXY_MEMORY_MB:-0}*1000000)) ## Handle chimeric options and output @@ -500,6 +501,7 @@ </section> <section name="perf" title="Performance tweaks / Troubleshooting" expanded="false"> <param argument="--outBAMsortingBinsN" type="integer" value="50" min="1" label="Number of genome bins for coordinate-sorting" help="Higher values result in lower RAM requirements during the sorting step. The default value is 50. Tweak this if you are facing memory-related errors." /> + <param argument="--winAnchorMultimapNmax" type="integer" value="50" min="50" label="Maximum number of loci anchors are allowed to map to" help="Higher value can increase the runtime singificantly. This value should be set greater or equal to --outFilterMultimapNmax" /> </section> </inputs> |