| Previous changeset 8:f5115df39480 (2017-04-27) Next changeset 10:d504d945a655 (2019-09-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439 |
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modified:
macros.xml |
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added:
test-data/clonefilter/R1_0001.1.fq.gz test-data/clonefilter/R2_0001.2.fq.gz test-data/clonefilter/Removed1_0001.1.1.fq.gz test-data/clonefilter/Removed1_0001.1.1.fq.single.gz test-data/clonefilter/Removed2_0001.2.2.fq.gz |
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| diff -r f5115df39480 -r 45db1ba16163 macros.xml --- a/macros.xml Thu Apr 27 04:18:58 2017 -0400 +++ b/macros.xml Sun May 21 18:54:28 2017 -0400 |
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| @@ -391,4 +391,19 @@ </when> </conditional> </xml> + + <xml name="barcode_encoding_single"> + <option value="--inline_null" selected="True">Barcode is inline with sequence</option> + <option value="--index_null">Barcode is provided in FASTQ header</option> + </xml> + + <xml name="barcode_encoding_pair"> + <option value="--inline_null" selected="True">Barcode is inline with sequence</option> + <option value="--null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option> + <option value="--index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option> + <option value="--inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option> + <option value="--index_index">random oligo is provded in FASTQ header (Illumina i5 and i7 read)</option> + <option value="--inline_index">random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header</option> + <option value="--index_inline">random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data)</option> + </xml> </macros> |
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