| Previous changeset 60:831217e0d6bb (2018-09-27) Next changeset 62:15a5b2d4928d (2018-09-27) |
|
Commit message:
Uploaded |
|
added:
test-data/output.gb |
| b |
| diff -r 831217e0d6bb -r 460b9934651b test-data/output.gb --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.gb Thu Sep 27 10:44:54 2018 -0400 |
| b |
| b'@@ -0,0 +1,1739 @@\n+LOCUS NC_015264 40973 bp DNA linear PHG 18-APR-2011\r\n+DEFINITION Pseudomonas phage phiIBB-PF7A, complete genome.\r\n+ACCESSION NC_015264\r\n+VERSION NC_015264.1\r\n+DBLINK BioProject: PRJNA64561\r\n+KEYWORDS RefSeq.\r\n+SOURCE Pseudomonas phage phiIBB-PF7A\r\n+ ORGANISM Pseudomonas phage phiIBB-PF7A\r\n+ Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae;\r\n+ Autographivirinae; T7virus.\r\n+REFERENCE 1 (bases 1 to 40973)\r\n+ AUTHORS Sillankorva,S., Kluskens,L.D., Lingohr,E.J., Kropinski,A.M.,\r\n+ Neubauer,P. and Azeredo,J.\r\n+ TITLE Complete genome sequence of the lytic Pseudomonas fluorescens phage\r\n+ phiIBB-PF7A\r\n+ JOURNAL Virol. J. 8 (1), 142 (2011)\r\n+ PUBMED 21439081\r\n+ REMARK Publication Status: Online-Only\r\n+REFERENCE 2 (bases 1 to 40973)\r\n+ CONSRTM NCBI Genome Project\r\n+ TITLE Direct Submission\r\n+ JOURNAL Submitted (21-MAR-2011) National Center for Biotechnology\r\n+ Information, NIH, Bethesda, MD 20894, USA\r\n+REFERENCE 3 (bases 1 to 40973)\r\n+ AUTHORS Sillankorva,S., Kluskens,L.H., Lingohr,E.J., Kropinski,A.M.,\r\n+ Neubauer,P. and Azeredo,J.\r\n+ TITLE Direct Submission\r\n+ JOURNAL Submitted (28-JAN-2010) Biological Engineering, University of Minho,\r\n+ Campus de Gualtar, Braga 4710-057, Portugal\r\n+COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final\r\n+ NCBI review. The reference sequence is identical to GU583987.\r\n+ COMPLETENESS: full length.\r\n+FEATURES Location/Qualifiers\r\n+ source 1..40973\r\n+ /organism="Pseudomonas phage phiIBB-PF7A"\r\n+ /mol_type="genomic DNA"\r\n+ /host="Pseudomonas fluorescens"\r\n+ /db_xref="taxon:942165"\r\n+ repeat_region 1..985\r\n+ /note="redundant terminal repeat"\r\n+ /rpt_type=direct\r\n+ regulatory 239..260\r\n+ /regulatory_class="promoter"\r\n+ /note=="predicted by PhagePromoter"\r\n+ gene 252..602\r\n+ /locus_tag="phiIBB-PF7Ap00"\r\n+ /db_xref="GeneID:10323835"\r\n+ CDS 252..602\r\n+ /locus_tag="phiIBB-PF7Ap00"\r\n+ /note="orf1"\r\n+ /codon_start=1\r\n+ /transl_table=11\r\n+ /product="hypothetical protein"\r\n+ /protein_id="YP_004306315.1"\r\n+ /db_xref="GeneID:10323835"\r\n+ /translation="MTNAKRTTAQTIKHKGRKYVVIHRSVTLLLLKRAGKPHHFTLEGG\r\n+ KEGTLKRHKDFWAALQHYSDRQDALGIKGHAVTAVVGTEDGPVVTEGELAAIELMASQG\r\n+ ATTGRVSAKEPN"\r\n+ gene 602..928\r\n+ /locus_tag="phiIBB-PF7Ap01"\r\n+ /db_xref="GeneID:10323784"\r\n+ CDS 602..928\r\n+ /locus_tag="phiIBB-PF7Ap01"\r\n+ /note="orf2"\r\n+ /codon_start=1\r\n+ /transl_table=11\r\n+ /product="hypothetical protein"\r\n+ /protein_id="YP_004306316.1"\r\n+ /db_xref="GeneID:10323784"\r\n+ /translation="MPKPNKYKGDGSKKPEGTVEGAYVMHKGRMVPNFQATDSAIERGI\r\n+ NAYKAFKGNAMLKCVTRIMLYIMVAAMCAALLFGMTGCQVNVVNVIHSDIGLDASSNLN\r\n+ ALTE"\r\n+ gene 996..1511\r\n+ /locus_tag="phiIBB-PF7Ap02"\r\n+ /db_xref="GeneID:10323785"\r\n+ CDS 996..1511\r\n+ /locus_tag="phiIBB-PF7Ap02"\r\n+ /note="orf3"\r\n+ /codon_start=1\r\n+ /transl_table=11\r\n+ /product="hypothetical protein"\r\n+ /protein_id="YP_004306317.1"\r\n+ /db'..b'aggagcatac agatgaccaa\r\n+ 37921 gaaagctacc gcaacctttg tggcagtgct ggtcagtctg gcgaaacacc gtgcgaccta\r\n+ 37981 tcgcttcctc gctgttcttc tcgttgccct tggtatctcc aatggcgaag cgattatgtc\r\n+ 38041 tgggatcgag accgtagctt gtgcgtacct tggctgcatc ggctgacgcc caacgaggct\r\n+ 38101 cattacgggt ctgctaaagc ataccctcca tgagcattga cttacagtac attcttcaag\r\n+ 38161 ggacctttca atgggtcatc cagtaccctt tagggtgcag cacatcaagg cccttcaagg\r\n+ 38221 gtcccttcaa gggtcccttc aagaatttac cataaatttt ccttacagga cctctcatag\r\n+ 38281 actaacccac cgagtacccc cgtggcccct ctcgtcaacc ctaacggcct ctggggcacc\r\n+ 38341 cctaagggga tcattacggt gctgggcacc tacagacaat catcaaggga taccggtagg\r\n+ 38401 cggtccctct atgggctacc tcatgtccta ccttggggca catcatgaac cctttaaggg\r\n+ 38461 gagctgtcaa ccctcaaggg atcattaagg ggacatcaag ggacttaagg ggagacctac\r\n+ 38521 agaccattac gtctccttgt cctaatctgt aaggcccatc aaggaaccat tgagagacca\r\n+ 38581 tcaaggccac cgtcaaggca cacaccctaa ggatagacca taggagaccc atcaaggctg\r\n+ 38641 gacatcaagg gattgacaaa gcgatccctg tgatctatta cgtgcgctac gcggtcatta\r\n+ 38701 aggggacttt aaaaccctca cctaaacagg gatgaacaat tgttgaaata agtggttgac\r\n+ 38761 accctcaaag gagtctgtag aatggccacc acaacgaagc gacacgccaa ggcggatcac\r\n+ 38821 tgagttgcct tgaagcttag tagttacggt ctgtgcgatc ctaagggtgc caaacgggct\r\n+ 38881 taacgtaacg aacacggata gggtgaaaca aaacgcttga cactgagtaa caacgctgta\r\n+ 38941 gaatacgcca catcagctac acaccgctct ttaacaactt ggatgcaaca tggtctgcaa\r\n+ 39001 ggctccgaaa ggacacctac aggcatcgct acgaaggcaa gcactgagcc ttctcatagc\r\n+ 39061 gcctttgaga acctgaacgg atgttacggg tagggttagc aagggcctta tgggaaccac\r\n+ 39121 ttaggagcct cacacaatgg cacgcttaga catgcacgtc actggtcttg aatatgatct\r\n+ 39181 ttcccttgag gaaaacgcac agggccagca aggattcacc gtgacatacg gtgcgcaagt\r\n+ 39241 caatcattac gaacggtttg atgaagcctt tatggacttc aatgaatcgc ttagccacgc\r\n+ 39301 tctggccctt cagggtctgt aaatcctcac tgataaggta caatcgcatg aacacgtcac\r\n+ 39361 agaaccgctt cattctggcc cacgcagcaa gcctgctggt caccgcttac aaagagtgca\r\n+ 39421 tcgctgagta tcagacggtg ctgccgctta acctgagcat cggccatgat gcacctgata\r\n+ 39481 gctacgctgc gctccgttcg caagcggctc agggtcaact gaaggtaagc acggcgcaca\r\n+ 39541 acgcctcgtc gatctacggg gcttcgggta acctcacgtt ccgcatcttt cacgactacg\r\n+ 39601 gtcacctgct gtatgacgct gagttcacca ctgagcaaga ggttagcctt gcgctgactc\r\n+ 39661 aatggcgtga cctgatccgc tacatccctc aggaatggca aggcatctgc tatgtggtct\r\n+ 39721 accgcgccga caccgtggca caaagcgagt atgaagcgat ccataaggac ttccctgtgg\r\n+ 39781 atcaaaaggc attcgttctg gacatcctga acaagcactt cgaggctgag ccacgatgag\r\n+ 39841 catgaacacg aatgaaacac tggacgccgt gctgattacc cgtgaagaac gcaaggcgct\r\n+ 39901 ggccgctctg ctgtactcag ggttgaccgg taacgcagtc gataagctgg gccttcgggc\r\n+ 39961 cttgcaggaa aagctttcat cggcctttaa gggttactgg gacacgttca atccgctcga\r\n+ 40021 caagcaccca acaatggctg accacgggat agcggaatgg gtcagcccgg attcaacgca\r\n+ 40081 gaagacacgg aacagcatcc aatgaacgtg actgtccggg gtctcttcaa gctctgcaat\r\n+ 40141 agctgcaacc aacggggcca agtggctcaa gtctggcttg tcgatcactt cgcttgccgc\r\n+ 40201 tgcatcttcc taccttacga ccatcaataa ggagtcacca tgaccaacgc aaagcgcacc\r\n+ 40261 acagctcaga ccatcaagca caagggtcgc aagtacgtcg taattcaccg ctcggttacc\r\n+ 40321 ctgctgttgc tgaagcgtgc cggtaagcct caccacttca cccttgaagg cggcaaagag\r\n+ 40381 ggcaccctga agcgtcataa agacttctgg gcggcactgc aacactacag cgaccgtcag\r\n+ 40441 gacgcactgg gcatcaaggg ccacgctgta accgctgtgg ttggcaccga ggacggccct\r\n+ 40501 gttgtcactg aaggcgagct ggccgcaatc gaactgatgg catcgcaagg ggccacaacg\r\n+ 40561 ggccgtgtta gcgccaagga accgaactaa tgccaaagcc taataagtac aagggtgacg\r\n+ 40621 gctccaagaa gcctgaaggg accgtagagg gcgcctacgt catgcacaag ggtcgcatgg\r\n+ 40681 tcccgaactt tcaagccacc gactcggcta tcgagcgggg catcaacgcc tacaaggcat\r\n+ 40741 tcaaggggaa cgctatgctg aagtgtgtga ctcgcatcat gctgtacatc atggtcgctg\r\n+ 40801 caatgtgtgc ggcgctgctg ttcgggatga ctggctgtca agtcaacgtc gtgaacgtga\r\n+ 40861 ttcacagtga catcgggctg gatgcgtcca gtaacctcaa cgctttgacc gagtagcgtt\r\n+ 40921 aatcggtggc cttctcttga gggtcacccg ttaaatccac tcactgctaa tgc\r\n+//\r\n' |