| Previous changeset 0:1ab4c65685f3 (2015-05-19) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fatotwobit_35x1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty |
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modified:
tool_dependencies.xml |
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| diff -r 1ab4c65685f3 -r 46615329ea72 tool_dependencies.xml --- a/tool_dependencies.xml Tue May 19 14:58:16 2015 -0400 +++ b/tool_dependencies.xml Fri Jul 17 10:22:24 2015 -0400 |
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| @@ -1,31 +1,36 @@ <tool_dependency> <package name="faToTwoBit" version="35x1"> <install version="1.0"> - <actions> - <action type="download_binary"> - <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/faToTwoBit_35x1</url_template> - <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/faToTwoBit_35x1</url_template> - <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/faToTwoBit_35x1</url_template> - <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/faToTwoBit_35x1</url_template> - </action> - - <action type="move_file"> - <source>faToTwoBit_35x1</source> - <destination>$INSTALL_DIR/bin/faToTwoBit</destination> - </action> - <action type="chmod"> - <file mode="755">$INSTALL_DIR/bin/faToTwoBit</file> - </action> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/ucsc/ucsc-312-Linux-x86_64.tar.gz</action> + <action type="shell_command">rm ucsc-312-Linux-x86_64.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!--actions architecture="x86_64" os="darwin"> + <action type="download_by_url"></action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions--> <action type="set_environment"> - <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> + <environment_variable name="UCSC_TOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> <environment_variable name="FATOTWOBIT_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable> </action> - - </actions> + </actions_group> </install> <readme> faToTwoBit: convert Fasta format sequence files to a dense randomly-accessable .2bit format that gfClient can use. http://genome.ucsc.edu/goldenPath/help/blatSpec.html + +This is a transitional package you should migrate to use packages with the name package_ucsc_tools_312 and upwards. + </readme> </package> </tool_dependency> |