| Previous changeset 6:2277dd59b9f9 (2017-11-01) Next changeset 8:b64758fa3a72 (2017-12-08) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
| b |
| diff -r 2277dd59b9f9 -r 466c62f481d3 tool_dependencies.xml --- a/tool_dependencies.xml Wed Nov 01 05:54:28 2017 -0400 +++ b/tool_dependencies.xml Wed Nov 01 06:24:06 2017 -0400 |
| b |
| @@ -15,7 +15,7 @@ <source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/clustal-omega-1.2.0-macosx</source> <destination>$INSTALL_DIR</destination> </action> - <action type="shell_command">sed -i "s%clustalOmegaCommand=clustalo%clustalOmegaCommand=$INSTALL_DIR/clustal-omega-1.2.0-macosx%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%clustalOmegaCommand=clustalo%clustalOmegaCommand=$INSTALL_DIR/clustal-omega-1.2.0-macosx%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> </actions> </actions_group> </install> @@ -45,8 +45,8 @@ <source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/hmmsearch</source> <destination>$INSTALL_DIR</destination> </action> - <action type="shell_command">sed -i "s%hmmbuildCommand=hmmbuild%hmmbuildCommand=$INSTALL_DIR/hmmbuild%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> - <action type="shell_command">sed -i "s%hmmsearchCommand=hmmsearch%hmmsearchCommand=$INSTALL_DIR/hmmsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%hmmbuildCommand=hmmbuild%hmmbuildCommand=$INSTALL_DIR/hmmbuild%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%hmmsearchCommand=hmmsearch%hmmsearchCommand=$INSTALL_DIR/hmmsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> </actions> </actions_group> </install> @@ -88,9 +88,9 @@ <source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/lib</source> <destination>$INSTALL_DIR</destination> </action> - <action type="shell_command">sed -i "s%hhmakeCommand=hhmake%hhmakeCommand=$INSTALL_DIR/hhmake%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> - <action type="shell_command">sed -i "s%hhsearchCommand=hhsearch%hhsearchCommand=$INSTALL_DIR/hhsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> - <action type="shell_command">sed -i "s%reformatCommand=reformat.pl%reformatCommand=$INSTALL_DIR/lib/hh/scripts/reformat.pl%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%hhmakeCommand=hhmake%hhmakeCommand=$INSTALL_DIR/hhmake%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%hhsearchCommand=hhsearch%hhsearchCommand=$INSTALL_DIR/hhsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> + <action type="shell_command">sed -i '' -e "s%reformatCommand=reformat.pl%reformatCommand=$INSTALL_DIR/lib/hh/scripts/reformat.pl%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action> <action type="set_environment"> <environment_variable name="HHLIB" action="set_to">$INSTALL_DIR/lib/hh</environment_variable> </action> |