Repository 'pirna_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/romaingred/pirna_pipeline

Changeset 33:46d7549c1a05 (2017-11-28)
Previous changeset 32:0cffda6c3d1a (2017-11-28) Next changeset 34:02c46c8164a8 (2017-11-28)
Commit message:
Uploaded
modified:
bin/piPipe.pl
b
diff -r 0cffda6c3d1a -r 46d7549c1a05 bin/piPipe.pl
--- a/bin/piPipe.pl Tue Nov 28 09:08:02 2017 -0500
+++ b/bin/piPipe.pl Tue Nov 28 09:08:13 2017 -0500
[
@@ -247,7 +247,7 @@
  my $ppp = $group_dir.'PPPartners/'; mkdir $ppp;
  print $report "ping_pong_partners $group_dir/piRNAs/TEs.sam $ppp\n";
  ping_pong_partners ( $group_dir.'TEs.fai', $group_dir.'piRNAs/piRNAs-TEs_sorted.bam', $ppp, $pi_min );
- my $ppp_page = $dir.$fastq_n[$child].'-bonafide_reads-PPP.html';
+ my $ppp_page = $dir.$fastq_n[$child].'-piRNAs-PPP.html';
  ppp_page ( $group_dir, $ppp_page, \@fastq_n, $fastq_n[$child], $ppp, $dir );
  }