| Next changeset 1:267b1a78abbe (2017-12-08) |
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Commit message:
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added:
btyper-2.0.3/btyper btyper-2.0.3/btyper.xml btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa btyper-2.0.3/seq_amr_db/argannot_clus80.fasta btyper-2.0.3/seq_amr_db/megares_grouped.fasta btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt btyper-2.0.3/seq_mlst_db/glp.fas btyper-2.0.3/seq_mlst_db/gmk.fas btyper-2.0.3/seq_mlst_db/ilv.fas btyper-2.0.3/seq_mlst_db/pta.fas btyper-2.0.3/seq_mlst_db/pur.fas btyper-2.0.3/seq_mlst_db/pyc.fas btyper-2.0.3/seq_mlst_db/tpi.fas btyper-2.0.3/seq_panC_db/panC.fasta btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta btyper-2.0.3/seq_virulence_db/headers.txt btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta |
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| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/btyper --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/btyper Wed Dec 06 06:01:57 2017 -0500 |
| [ |
| b'@@ -0,0 +1,905 @@\n+#!/usr/bin/env python\n+\n+# BTyper version 2.0.3\n+# Created by Laura Carroll\n+# lmc297@cornell.edu\n+\n+# import required packages\n+import argparse, sys, os, re, glob, collections\n+\t\n+\n+# parse arguments\n+parser = argparse.ArgumentParser(usage=\'btyper -i </path/to/input/file.extension> -o </path/to/desired/output_directory/> -t [input data format (seq, pe, se, sra, or sra-get)] [-other options]\')\n+parser.add_argument(\'-i\',\'--input\', nargs=\'+\', help=\'Enter the path to the Bacillus cereus group sequence data you would like to input, or enter an SRA accession number\',required=True)\n+parser.add_argument(\'-o\', \'--output\', nargs=\'+\', help=\'Specify a path to your desired output directory\',required=True)\n+parser.add_argument(\'-t\', \'--type\', nargs=\'+\', help=\'Specify your type of data: seq for genomes or contigs in fasta format, pe for paired-end Illumina reads, se for single-end Illumina reads, sra for a sra file, or sra-get with an SRA accession number\',required=True)\n+parser.add_argument(\'--draft_genome\', action=\'store_true\', default=False, help=\'Optional argument for use with contigs in fasta format; concatenates draft genome contigs into pseudochromosome\')\n+parser.add_argument(\'-v\', \'--virulence\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform virulence gene typing; default=True\')\n+parser.add_argument(\'-m\', \'--mlst\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform MLST using Bacillus cereus MLST database; default=True\')\n+parser.add_argument(\'-r\', \'--rpoB\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform rpoB typing; default=True\')\n+parser.add_argument(\'-p\', \'--panC\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform panC typing; default=True\')\n+parser.add_argument(\'-s\', nargs=\'?\', default=False, help=\'Optional argument, True or False; BLAST 16s DNA sequence; not recommended for inferring species or pathogenicity; default=False\')\n+parser.add_argument(\'--spades_m\', nargs=\'?\', default=250, help=\'Optional argument for use with Illumina reads; integer; set SPAdes memory limit -m/--memory option in Gb; default is 250 Gb, the default for SPAdes\')\n+parser.add_argument(\'--spades_t\', nargs=\'?\', default=16, help=\'Optional argument for use with Illumina reads; integer; set number of threads to use for SPAdes -t/--threads option; default is 16, the default for SPAdes\')\n+parser.add_argument(\'--spades_k\', nargs=\'?\', default=77, help=\'Optional argument for use with Illumina reads; comma-separated list of integers; set k-mer sizes to use with SPAdes -k option; default is 77\')\n+parser.add_argument(\'-v_db\', \'--virulence_database\', nargs=\'?\', default="aa", help=\'Optional argument for use with -v/--virulence option; specify virulence database to be used: nuc for nucleotide database or aa for amino acid database; default=aa\')\n+parser.add_argument(\'-nuc_p\', \'--nucleotide_p\', nargs=\'?\',default=75, help=\'Optional argument for use with -v/--virulence option and nucleotide database -v_db nuc option; integer between 0 and 100; minimum percent nucleotide identity for virulence gene detection; default=75\')\n+parser.add_argument(\'-nuc_q\',\'--nucleotide_q\', nargs=\'?\',default=90, help=\'Optional argument for use with -v/--virulence option and nucleotide database -v_db nuc option; integer between 0 and 100; minimum percent coverage for virulence gene detection; default=90\')\n+parser.add_argument(\'-aa_p\',\'--amino_acid_p\',nargs=\'?\',default=50, help=\'Optional argument for use with -v/--virulence option and amino acid database -v_db aa option; integer between 0 and 100; minimum percent amino acid identity for virulence gene detection; default=50\')\n+parser.add_argument(\'-aa_q\',\'--amino_acid_q\', nargs=\'?\',default=70, help=\'Optional argument for use with -v/--virulence option and amino acid database -v_db aa option; integer between 0 and 100; minimum percent coverage for virulence gene detection; default=70\')\n+parser.add_argument(\'-e\', \'--evalue\', nargs=\'?\', def'..b't_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n+\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n+\t\t\t\tbetween_sections(finalfile_string=f)\n+\t\texcept UnboundLocalError:\n+\t\t\tprint "No sequences found for "+shorttask\n+\t\n+\t# if performing mlst:\t\n+\tif marg=="True":\n+\t\tmlst_genes=["glp.fas","gmk.fas","ilv.fas","pta.fas","pur.fas","pyc.fas","tpi.fas"]\n+\t\t# get best-matching AT for each MLST gene\n+\t\tfor mlst in mlst_genes:\n+\t\t\tquery_path=btyper_path+"seq_mlst_db/"+mlst\n+\t\t\tmydb=dbparse(query_path)\n+\t\t\ttask="Predicted MLST Profile:"\n+\t\t\tshorttask="mlst"\n+\t\t\tevalue_thresh=float(earg)\n+\t\t\tpident_thresh=0\n+\t\t\tqcov_thresh=0\n+\t\t\t# run AT for each gene, if sequence deteced\n+\t\t\ttry:\n+\t\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n+\t\t\texcept UnboundLocalError:\n+\t\t\t\tprint "No sequences found for "+mlst\n+\t\t# loop through isolatefiles\n+\t\tfor root, dirs, files in os.walk(oarg+"btyper_final_results/isolatefiles/"):\n+\t\t\tfor d in dirs:\n+\t\t\t\tdirroot=d.split("_results")[0]\n+\t\t\t\t# open mlst results file, and get ST from ATs\n+\t\t\t\ttry:\t\n+\t\t\t\t\tnewf=open(oarg+"btyper_final_results/isolatefiles/"+d+"/"+dirroot.strip()+"_mlst_results.txt","r")\n+\t\t\t\t\tfinalfile_string=oarg+"btyper_final_results/"+dirroot.strip()+"_final_results.txt"\n+\t\t\t\t\tff=open(finalfile_string,"r")\n+\t\t\t\t\tflines=ff.readlines()\t\n+\t\t\t\t\tif not any("Predicted MLST Profile" in fl.strip() for fl in flines):\n+\t\t\t\t\t\tget_st(mlst_infile=newf,st_file=btyper_path+"seq_mlst_db/b_cereus_mlst_db.txt",finalfile_string=finalfile_string,mlst_genes=mlst_genes)\n+\t\t\t\texcept IOError:\n+\t\t\t\t\tprint "No sequences found for "+shorttask\n+\n+\t# if performing rpoB typing:\n+\tif rarg=="True":\n+\t\t# define database\n+\t\tquery_path=btyper_path+"seq_rpoB_db/rpobdatabase08122015.fa"\n+\t\tmydb=dbparse(query_path)\n+\t\ttask="Predicted rpoB Allelic Type:"\n+\t\tshorttask="rpoB"\n+\t\tevalue_thresh=float(earg)\n+\t\tpident_thresh=0\n+\t\tqcov_thresh=0\n+\t\t# perform rpoB typing, if gene is present\n+\t\ttry:\n+\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n+\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n+\t\t\t\tbetween_sections(finalfile_string=f)\n+\t\texcept UnboundLocalError:\n+\t\t\tprint "No sequences found for "+shorttask\n+\t\n+\t# if performing 16s typing:\n+\tif sarg=="True":\n+\t\t# define database\n+\t\tquery_path=btyper_path+"seq_16s_db/b_cereus_group_16s_db.fasta"\n+\t\tmydb=dbparse(query_path)\n+\t\ttask="Predicted 16s Type"\n+\t\tshorttask="16s"\n+\t\tevalue_thresh=float(earg)\n+\t\tpident_thresh=0\n+\t\tqcov_thresh=0\n+\t\t# perform 16s typing, if gene is present\n+\t\ttry:\n+\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n+\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n+\t\t\t\tbetween_sections(finalfile_string=f)\n+\t\texcept UnboundLocalError:\n+\t\t\tprint "No sequences found for "+shorttask\n+\n+print "Typing complete...how neat is that?"\n+print ""\n+print "Thank you for using BTyper! For more fun, take your output files to BMiner, BTyper\'s companion application for data aggregation and visualization."\n+print ""\n+print "To cite BTyper and/or BMiner, please use the following:"\n+print "Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann. 2017. Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data. Applied and Environmental Microbiology 2017 Jun 16. pii: AEM.01096-17. doi: 10.1128/AEM.01096-17."\n+\n+\n' |
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| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/btyper.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/btyper.xml Wed Dec 06 06:01:57 2017 -0500 |
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| @@ -0,0 +1,57 @@ +<tool id="btyper" name="BTyper" version="2.0.3"> + <requirements> + <requirement type="package" version="2.7">python</requirement> + <requirement type="package">biopython</requirement> + <requirement type="package">blast</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + + $__tool_directory__/btyper + -t seq + #if $jobtype.select == "seq" + -i $jobtype.asm + #else if $jobtype.select == "draft" + -i $jobtype.draft --draft_genome + #end if + + -o "./"; cat btyper_final_results/*.txt > results.txt; + + ]]></command> + <inputs> + <conditional name="jobtype"> + <param name="select" type="select" label="Assembly or FASTQ Reads?"> + <option value="draft">Draft Genome</option> + <option value="seq">Complete Genome</option> + </param> + <when value="seq"> + <param name="asm" type="data" format="fasta" label="FASTA" /> + </when> + <when value="draft"> + <param name="draft" type="data" format="fasta" label="FASTA" /> + </when> + </conditional> + + </inputs> + <outputs> + <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/> + </outputs> + <help><![CDATA[ + BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. + + The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file. + + ]]></help> + <citations> + <citation type="bibtex"> + @misc{carrol_kovac_miller_wiedman_2017, + title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.}, + url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17}, + journal={Applied and Environmental Microbiology}, publisher={ASM}, + author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann}, + year={2017}, month={Jun}} , + }</citation> + </citations> + + + +</tool> |
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| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta Wed Dec 06 06:01:57 2017 -0500 |
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| b'@@ -0,0 +1,18 @@\n+>16s_CP006863_1_Bacillus_toyonensis_BCT_7112\n+TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTGAGAGCTTGCTCTCAAGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACTGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n+>16s_NC_004722_1_Bacillus_cereus_ATCC_14579\n+TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n+>16s_NZ_CM000742_1_Bacillus_mycoides_DSM_2048\n+TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTACCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAATATTTTGAACTGCATAGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGC'..b'GACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n+>16s_FSL_W8_0169_N711_S502_Bacillus_wiedmannii\n+TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACTGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTATGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n+>16s_NZ_CP007666_1_Bacillus_anthracis_str_Vollum\n+TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGACAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTTAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa Wed Dec 06 06:01:57 2017 -0500 |
| b |
| @@ -0,0 +1,21 @@ +>S002287574 Bacillus cereus (T); ATCC 14579; AE016877 +TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGaatggattaaga +gcttgctcttatgaagttAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAA +ACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATtGAAAGGcggcttcggctgTCACTTATGGATGGA +CCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCC +ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGG +AGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAacaagtgctagttgaataagc +tggcacctTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGT +TATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGG +GTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGG +AGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAG +ATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGggtttccgccCTTTAGTGCTGAAGTTAACGCAT +TAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT +GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTtctcctt +cgggagCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCA +ACCCTTGATCTTAGTTGCCATCAttaagtTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGA +CGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGG +TGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAAT +CGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCC +GAAGTCGGTggggtaacctttttggagccaGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCC +GTATCGGAAGGTGCGGCTGGATCACCTCCTTT |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_amr_db/argannot_clus80.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_amr_db/argannot_clus80.fasta Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b"@@ -0,0 +1,3616 @@\n+>438amr___(AGly)Aac|AJ628983|1985-2539|555\n+ATGCCCTCCCACGATCATCCTGTCACCTTGCGGCTTATGACGGAGCAAGACCTGCCTATGCTCCATGAATGGCTGAATCGGCCGCACATAGTCGAGTGGTGGGGCGGTGAAGAGCAACGTCCGACACTGGCGGATGTACTGGAACACTACAGGCCCAGAATCTTGGCGCACGAGTCGGTCACTCCATACATCGCCATGCTGGGCGAAGAACCAATCGGATATGCGCAGTCGTACGTCGCGCTCGGAAGCGGCGATGGATGGTGGGAAGAGGAAACCGACCCAGGAGTACGAGGAATCGATCAGTCGTTGGCGAATCCTACGCAGTTGAACATGGGCCTGGGAACAGAGCTTGTGCGAGCGCTGGTTGATCGGTTGTTCTCCGACCCAACGGTGACAAAGATCCAGACTGATCCGGCCCCAAACAATCGCCGCGCGATCCGCTGCTACGAGAAGGCGGGCTTTGTGCAGGAGAGAGTCATCACGACACCCGACGGGCAGGCCGTCTACATGACCCAATCTAGGCAAGCCTACGAGCGTGCGCGCGGTGCTGCCTAA\n+>450amr___(AGly)Aac2-Ia|L06156|264-800|537\n+ATGGGCATAGAATACCGCAGTCTGCATACCAGCCAATTGACACTGAGTGAAAAAGAAGCGCTTTACGATTTATTAATTGAAGGTTTTGAAGGCGATTTTTCGCATGACGATTTCGCGCACACTTTAGGTGGAATGCACGTCATGGCTTTTGATCAACAAAAATTGGTTGGTCATGTTGCAATTATTCAACGCCATATGGCCCTAGATAATACGCCTATCTCTGTAGGGTATGTTGAAGCGATGGTAGTTGAACAAAGTTATCGTCGCCAAGGTATTGGGCGGCAATTGATGCTGCAAACCAATAAAATTATAGCTTCGTGTTATCAATTAGGGCTGCTGTCGGCTTCAGATGATGGACAAAAATTGTATCATTCGGTTGGATGGCAAATCTGGAAAGGTAAGTTGTTTGAATTGAAACAAGGGAGCTATATCCGTTCTATTGAAGAAGAAGGCGGAGTCATGGGCTGGAAAGCGGATGGTGAGGTTGATTTTACCGCTTCGCTTTACTGTGATTTTCGTGGCGGTGATCAGTGGTAA\n+>426amr___(AGly)Aac2-Ib|U41471|266-822|588\n+GTGCCTTTCCAGGATGTCAGCGCGCCCGTTCGAGGCGGGATCCTGCACACCGCTCGACTCGTCCACACCTCCGATCTCGATCAGGAGACTCGAGAGGGCGCCCGCCGCATGGTCATCGAGGCGTTCGAGGGTGATTTCAGCGACGCCGACTGGGAGCACGCGCTCGGTGGCATGCACGCCTTCATCTGTCACCACGGCGCTCTGATCGCGCATGCCGCGGTGGTCCAGCGCCGGCTGCTCTACCGCGACACCGCGCTGCGCTGCGGGTACGTGGAAGCCGTGGCGGTGCGCGAAGATTGGCGCGGCCAAGGCCTGGCCACCGCCGTCATGGACGCGGTCGAACAGGTGCTGCGCGGCGCCTACCAGCTCGGCGCCCTCAGTGCGTCCGACACAGCCAGAGGCATGTACCTCTCTCGCGGGTGGCTGCCGTGGCAGGGGCCGACCTCGGTGCTGCAGCCGGCCGGCGTGACGCGTACACCCGAGGACGACGAGGGACTGTTCGTGCTGCCCGTCGGTCTCCCGGCGGGAATGGAACTCGACACCACAGCCGAGATCACCTGCGACTGGCGCGACGGGGACGTCTGGTAA\n+>446amr___(AGly)Aac2-Ic|U72714|373-918|546\n+GTGCACACCCAGGTACACACGGCCCGCCTGGTCCACACCGCCGATCTTGACAGCGAGACCCGCCAGGACATCCGTCAGATGGTCACCGGCGCGTTTGCCGGTGACTTCACCGAGACCGACTGGGAGCACACGCTGGGTGGGATGCACGCCCTGATCTGGCATCACGGGGCGATCATCGCGCATGCCGCGGTGATCCAGCGGCGACTGATCTACCGCGGCAACGCGCTGCGCTGCGGGTACGTCGAAGGCGTTGCGGTGCGGGCGGACTGGCGGGGCCAACGCCTGGTGAGCGCGCTGTTGGACGCCGTCGAGCAGGTGATGCGCGGCGCTTACCAGCTCGGAGCGCTCAGTTCCTCGGCGCGGGCCCGCAGACTGTACGCCTCACGCGGCTGGCTGCCCTGGCACGGCCCGACATCGGTACTGGCACCAACCGGTCCAGTCCGTACACCCGATGACGACGGAACGGTGTTCGTCCTGCCCATCGACATCAGCCTGGACACCTCGGCGGAGCTGATGTGCGATTGGCGCGCGGGCGACGTCTGGTAA\n+>411amr___(AGly)Aac(2')-Id|U72743|386-1018|533\n+GTGCTCACCCAGCATGTCAGTGAGGCTCGCACGCGCGGTGCGATCCACACCGCGCGTCTGATCCACACCTCCGATCTGGACCAGGAAACCCGCGACGGCGCGCGCCGCATGGTGATCGAGGCGTTCCGCGATCCGTCCGGAGACAGTGATTTCACCGACGATTTCACCGACGACGACTGGGACCACGCGCTCGGCGGCATGCACGCGCTGATCTCTCACCACGGTGCGCTCATCGCGCACGGCGCCGTCGTCCAACGTCGGTTGATGTACCGGGGACCCGACGGTAGAGGTCACGCGCTGCGCTGCGGTTACGTCGAGGCCGTCGCGGTGCGCGAGGACCGGCGGGGCGACGGTCTGGGCACCGCCGTGCTCGACGCGCTCGAGCAGGTGATCCGCGGCGCCTATCAGATCGGCGCGCTGAGCGCGTCGGACATCGCCCGGCCGATGTACATTGCCAGGGGCTGGCTGTCGTGGGAGGGTCCGACATCGGTGCTGACCCCCACCGAGGGCATCGTTCGCACCCCTGAGGACGACCGGTCGCTGTTCGTCCTGCCGGTCGATCTCCCGGACGGCCTCGAGTTGGACACCGCGCGCGAGATCACGTGCGACTGGCGCTCCGGCGACCCCTGGTGA\n+>443amr___(AGly)Aac2-Ie|NC_011896|3039059-3039607|549\n+ATGGATACCCACCACGTACATACCGCCCGCCTGGTTCATACCGCCGATCTCGACGGCGAGACTCTCCGGCGCCTCCAGCAGATGGTCACCGACGCTTTCGCCGGAGACTTCGACGAGACCGACTGGGAACACGCATTGGGCGGGATGCACGCCCTGATCTGGCGGCACGGCACAATCATTGCGCACGCCGCGGTCGTTCAGCGGCGACTATTCTACCACGGCAACGCGTTGCGTTGCGGTTACCTCGAAGGTGTCGCGGTACGGAAGGACTGCCGGGGCCGCGGACTTGTACATGCGCTGCTGGACGCTATCGAGCAAGTGATACGCGGCGCCTATCAATTCGGTGCCTTGAGTTCCTCGGACCGAGCCCGTCGGGTGTATATGTCGCGCGGGTGGTTACCATGGCTCGGCCCGACGTCAGTGCTGGCTCCTACCGGTGTGATCCGTACGCCCGATGATGACGGCTCGGTGTTTGTCCTTCCGGTCGGCATCAACCCGGACACCTCCTCGGGGTTGATGTGCGATTGGCGCGCAGGCAACGTGTGGTAA\n+>452amr___(AGly)Aac3-I|AJ877225|5293-5757|465\n+ATGGGCATCATTCGCACATGTAGGCTCGGTCCGGACCAAGTGCAATCCATGCGGGCTGCTCTTGATCTCTTCGGTCGTGAGTTCGGAGACGTAGCCAGCTACTCCCAACATCAGCCGGACTCCGATTACCTCGCGAAATTGCTCCACAGCAGGACATTCATCGCGCTTGCCGCGTTCGACCAAGAATCGGTTGTTGGCGCTCTTGCCGCCTACGTTTTGCCAAAGTTTGAGCA"..b'TTCCAGAAGTGAATTATGAGGAATGGAATGAGGTATTTGCCCAAAAAGGGATAAAGAATGATAAAAATCCGTATAACTACTATTTTCATGTATATGAAAGAAAAAACTTATTGAGTTAA\n+>459amr___(Tmt)DfrK|FM207105|2788-3279|492\n+ATGAAAGTTTCTTTAATTGCTGCGATGGATAAGAACAGGGTAATAGGTAAAGAGAATGACATACCTTGGAGAATCCCAGAGGATTGGGAGTATGTTAAAAATACTACAAAGGGATATCCAATTATATTAGGAAGGAAGAATCTTGAATCAATCGGAAGAGCATTACCTGGAAGAAGGAATATTATTCTGACAAGAGATAAGGGGTTCAGCTTTAATGGTTGTGAAATCGTCCATTCAATAGAAGATGTTTTTGAGTTATGTAATAGCGAAGAGGAAATTTTCATTTTCGGGGGAGAACAAATTTATAATTTGTTTCTACCATATGTTGAGAAAATGTACATTACAAAAATTCATTACGAATTTGAAGGAGATACATTCTTTCCAGAAGTGAATTATGAAGAGTGGAACGAAGTATCTGTTACACAAGGAATAACAAATGAAAAAAATCCTTATACATATTATTTTCATATTTATGAGCGAAAAGCTTCTTGA\n+>30amr___(Col)MCR-1|KP347127|22413-24038|1626\n+ATGATGCAGCATACTTCTGTGTGGTACCGACGCTCGGTCAGTCCGTTTGTTCTTGTGGCGAGTGTTGCCGTTTTCTTGACCGCGACCGCCAATCTTACCTTTTTTGATAAAATCAGCCAAACCTATCCCATCGCGGACAATCTCGGCTTTGTGCTGACGATCGCTGTCGTGCTCTTTGGCGCGATGCTACTGATCACCACGCTGTTATCATCGTATCGCTATGTGCTAAAGCCTGTGTTGATTTTGCTATTAATCATGGGCGCGGTGACCAGTTATTTTACTGACACTTATGGCACGGTCTATGATACGACCATGCTCCAAAATGCCCTACAGACCGACCAAGCCGAGACCAAGGATCTATTAAACGCAGCGTTTATCATGCGTATCATTGGTTTGGGTGTGCTACCAAGTTTGCTTGTGGCTTTTGTTAAGGTGGATTATCCGACTTGGGGCAAGGGTTTGATGCGCCGATTGGGCTTGATCGTGGCAAGTCTTGCGCTGATTTTACTGCCTGTGGTGGCGTTCAGCAGTCATTATGCCAGTTTCTTTCGCGTGCATAAGCCGCTGCGTAGCTATGTCAATCCGATCATGCCAATCTACTCGGTGGGTAAGCTTGCCAGTATTGAGTATAAAAAAGCCAGTGCGCCAAAAGATACCATTTATCACGCCAAAGACGCGGTACAAGCAACCAAGCCTGATATGCGTAAGCCACGCCTAGTGGTGTTCGTCGTCGGTGAGACGGCACGCGCCGATCATGTCAGCTTCAATGGCTATGAGCGCGATACTTTCCCACAGCTTGCCAAGATCGATGGCGTGACCAATTTTAGCAATGTCACATCGTGCGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCAGCTATCTGGGCGCGGATGAGTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTGGATACGCTGGATCGCTTGGGCGTAAGTATCTTGTGGCGTGATAATAATTCGGACTCAAAAGGCGTGATGGATAAGCTGCCAAAAGCGCAATTTGCCGATTATAAATCCGCGACCAACAACGCCATCTGCAACACCAATCCTTATAACGAATGCCGCGATGTCGGTATGCTCGTTGGCTTAGATGACTTTGTCGCTGCCAATAACGGCAAAGATATGCTGATCATGCTGCACCAAATGGGCAATCACGGGCCTGCGTATTTTAAGCGATATGATGAAAAGTTTGCCAAATTCACGCCAGTGTGTGAAGGTAATGAGCTTGCCAAGTGCGAACATCAGTCCTTGATCAATGCTTATGACAATGCCTTGCTTGCCACCGATGATTTCATCGCTCAAAGTATCCAGTGGCTGCAGACGCACAGCAATGCCTATGATGTCTCAATGCTGTATGTCAGCGATCATGGCGAAAGTCTGGGTGAGAACGGTGTCTATCTACATGGTATGCCAAATGCCTTTGCACCAAAAGAACAGCGCAGTGTGCCTGCATTTTTCTGGACGGATAAGCAAACTGGCATCACGCCAATGGCAACCGATACCGTCCTGACCCATGACGCGATCACGCCGACATTATTAAAGCTGTTTGATGTCACCGCGGACAAAGTCAAAGACCGCACCGCATTCATCCGCTGA\n+>32amr___(Col)MCR-2|LT598652|26779-28395|1617\n+ATGACATCACATCACTCTTGGTATCGCTATTCTATCAATCCTTTTGTGCTGATGGGTTTGGTGGCGTTATTTTTGGCAGCGACAGCGAACCTGACATTTTTTGAAAAAGCGATGGCGGTCTATCCTGTATCGGATAACTTAGGCTTTATCATCTCAATGGCGGTGGCGGTGATGGGTGCTATGCTACTGATTGTCGTGCTGTTATCCTATCGCTATGTGCTAAAGCCTGTCCTGATTTTGCTACTGATTATGGGTGCGGTGACGAGCTATTTTACCGATACTTATGGCACGGTCTATGACACCACCATGCTCCAAAATGCCATGCAAACCGACCAAGCCGAGTCTAAGGACTTGATGAATTTGGCGTTTTTTGTGCGAATTATCGGGCTTGGCGTGTTGCCAAGTGTGTTGGTCGCAGTTGCCAAAGTCAATTATCCAACATGGGGCAAAGGTCTGATTCAGCGTGCGATGACATGGGGTGTCAGCCTTGTGCTGTTGCTTGTGCCGATTGGACTATTTAGCAGTCAGTATGCGAGTTTCTTTCGGGTGCATAAGCCAGTGCGTTTTTATATCAACCCGATTACGCCGATTTATTCGGTGGGTAAGCTTGCCAGTATCGAGTACAAAAAAGCCACTGCGCCAACAGACACCATCTATCATGCCAAAGACGCCGTGCAGACCACCAAGCCGAGCGAGCGTAAGCCACGCCTAGTGGTGTTCGTCGTCGGTGAGACGGCGCGTGCTGACCATGTGCAGTTCAATGGCTATGGCCGTGAGACTTTCCCGCAGCTTGCCAAAGTTGATGGCTTGGCGAATTTTAGCCAAGTGACATCGTGTGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCAGCTATTTGGGTCAAGATGACTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTAGATACGCTTGACCGCTTGGGTGTGGGTATCTTGTGGCGTGATAATAATTCAGACTCAAAAGGCGTGATGGATAAGCTACCTGCCACGCAGTATTTTGATTATAAATCAGCAACCAACAATACCATCTGTAACACCAATCCCTATAACGAATGCCGTGATGTCGGTATGCTTGTCGGGCTAGATGACTATGTCAGCGCCAATAATGGCAAAGATATGCTCATCATGCTACACCAAATGGGCAATCATGGGCCGGCGTACTTTAAGCGTTATGATGAGCAATTTGCCAAATTCACCCCCGTGTGCGAAGGCAACGAGCTTGCCAAATGCGAACACCAATCACTCATCAATGCCTATGACAATGCGCTACTTGCGACTGATGATTTTATCGCCAAAAGCATCGATTGGCTAAAAACGCATGAAGCGAACTACGATGTCGCCATGCTCTATGTCAGTGACCACGGCGAGAGCTTGGGCGAAAATGGTGTCTATCTGCATGGTATGCCAAATGCCTTTGCACCAAAAGAACAGCGAGCTGTGCCTGCGTTTTTTTGGTCAAATAATACGACATTCAAGCCAACTGCCAGCGATACTGTGCTGACGCATGATGCGATTACGCCAACACTGCTTAAGCTGTTTGATGTCACAGCGGGCAAGGTCAAAGACCGCGCGGCATTTATCCAGTAA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_amr_db/megares_grouped.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_amr_db/megares_grouped.fasta Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,6854 @@\n+>1amr___(betalactams)BLAZ|CARD|phgb|NC_010066|9682-10528|ARO:3000621|PC1|betalactams|Class_A_betalactamases|BLAZ\n+TTAAAATTCCTTCATTACACTCTTGGCGGTTTCACTTATCAACTTATCATTTGGCTTATCACTTTTATTGTCTTTATTCGTAAAAATGACTAAAACAATAGGTTCAGATTGGCCCTTAGGATAAACAAAAGCAACATCATTTCTAGAAGCATATGTTATTGCTTGACCACTTTTATCAGCAACTTTATAGTCTTTTGGAATACCATCTTTAATTAAAGTGTCTCCGTTTTTATTATTTAACATTAAATCAAGTAAGAAATTTTTATTTTTTTTGCTTAATTTTCCATTTGCGATAAGTTTATTTAAAGTCTTGCCGAAAGCAGCAGGCGTTGAAGTATCTTTTTTGCTCTTTGGTGAATAGTAATTTAATTCTATTTCATATCTAACTGGATTTGTTACTTTATCTCCCAATTTTTTTAAACGTTTTTTAATTTTTTTGATTCCACCGATTTCGTTTATAATTTTATTGTTTGCTGTATTATCACTGTACTTCATTGAAGCCTCAATAAGTTCTTTTAAAGCGATATCTTTTCCTACATATTTTTCTAAAATAGGAGAATAAGCAACTATATCATCTTTGTTAATATGTACTTTTTTATTTAACTTATTATAAGGTACTTGTTCTAACAAAATAGCACTATTTATCGCTTTTGAAGTCGAAGCATAGGCAAATCTCTTATCTGAATTAAATTTTACTTCCTTACCACTTTTAGTATCTAAAGCATAAACACCAATATGAGCATTATATTTTTTTTCTAAATCATTTAACTCTTTGGCATGTGAACTGTTTGAATTACATGCACTTAAAACTAAAGCAATTACAATTAAAAATATTAACTTTTTCAAA\n+>1amr___(betalactams)BLAZ|Bla|BlaZ|AB245469|2235-3080|861|betalactams|Class_A_betalactamases|BLAZ\n+TTGAAAAAGTTAATATTTTTAATTGTAATTGCTTTAGTTTTAAGTGCATGTAATTCAAACAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATGCTCATATTGGTGTTTATGCTTTAGATACTAAAAGTGGTAAGGAAGTAAAATTTAATTCAGATAAGAGATTTGCCTATGCTTCAACTTCAAAAGCGATAAATAGTGCTATTTTGTTAGAACAAGTACCTTATAATAAGTTAAATAAAAAAGTACATATTAACAAAGATGATATAGTTGCTTATTCTCCTATTTTAGAAAAATATGTAGGAAAAGATATCACTTTAAAAGCACTTATTGAGGCTTCAATGACATATAGTGATAATACAGCAAACAATAAAATTATAAAAGAAATCGGTGGAATCAAAAAAGTTAAACAACGTCTAAAAGAACTAGGAGATAAAGTAACAAATCCAGTTAGATATGAGATAGAATTAAATTACTATTCACCAAAGAGCAAAAAAGATACTTCAACACCTGCTGCTTTCGGTAAGACTTTAAATAAACTTATCGCAAATGGAAAATTAAGCAAAGAAAACAAAAAATTCTTACTTGATTTAATGTTAAATAATAAAAGCGGAGATACTTTAATTAAAGACGGTGTTCCAAAAGACTATAAGGTTGCTGATAAAAGTGGTCAAGCAATAACATATGCTTCTAGAAATGATGTTGCTTTTGTTTATCCTAAGGGCCAATCTGAACCTATTGTTTTAGTCATTTTTACGAATAAAGACAATAAAAGTGATAAGCCAAATGATAAGTTGATAAGTGAAACCGCCAAGAGTGTAATGAAGGAATTTTAA\n+>1amr___(betalactams)BLAZ|Bla|Z_32_AP004832|betalactams|Class_A_betalactamases|BLAZ\n+TTGAAAAAGTTAATATTTTTAATTGTAATGGCTTTAGTTTTAAGTGCATGTAATTCAAACAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATGCTCATATTGGTGTTTATGCTTTAGATACTAAAAGTGGTAAGGAAGTAAAATTTAATTCAGATAAGAGATTTGCCTATGCTTCGACTTCAAAAGCGATAAATAGTGCTATTTTGTTAGAACAAGTACCTTATAATAAGTTAAATAAAAAAGTACATATTAACAAAGATGATATAGTTGCTTATTCTCCTATTTTAGAAAAATATGTAGGAAAAGACATCACTTTAAAAGAACTTATTGAGGCTTCAATGACATATAGTGATAATACAGCAAACAATAAAATTATAAAAGAAATCGGTGGAATCAAAAAAGTTAAACAACGTCTAAAAGAACTAGGAGATAAAGTAACAAATCCAGTTAGATATGAGATAGAATTAAATTACTATTCGCCAAAGAGCAAAAAAGATACTTCAACGCCTGCTGCTTTCGGCAAGACTTTAAATAAACTTATCGCAAATGGAAAATTAAGCAAAAAAAATAAAAATTTCTTACTTGATTTAATGTTTAATAATAAAAACGGAGACACTTTAATTAAAGATGGTGTTCCAAAAGACTATAAGGTTGCTGATAAAAGTGGTCAAGCAATAACATATGCTTCTAGAAATGATGTTGCTTTTGTTTATCCTAAGGGCCAATCTGAACCTATTGTTTTAGTCATTTTTACGAATAAAGACAATAAAAGTGATAAGCCAAATGATAAGTTGATAAGTGAAACCGCCAAGAGTGTAATGAAGGAATTTTAA\n+>1amr___(betalactams)BLAZ|Bla|FR823292.1|gene2|betalactams|Class_A_betalactamases|BLAZ\n+TTGAAAAAATTAATAATTTTAGTCGTGTTAGCGTTGATATTAAGTGCTTGTAATAGTAAGAATTCAACTAATAACGACATTGAAAAGATCGAAAAAAAATATGGTGCTAACGTAGGTATGTATGCTCTTAATACTCAAAATGGTAAAGAATTATCATTTAATGAAAATAAGCGTTTTGCATATGCTTCCACATTAAAAACTATAAGTAGCGCAATGCTGCTTGAACAAACACCTTACAACAAATTAGATAAAAAAATTCACATTAATAAAGATGATATTGTTCCATATTCACCAGTGTTAGAAAAATATATTGGCAAAGAGATAACTTTAAAAAAGCTTATAGAAGCTACCATGTTATTTAGCGATAACACGGCTAATAATAAAATTATCGATGAATTGGGAGGATATGGGCAAGTAAAAACGAAACTGATAGATTTAGGCGATACAACGACACATCCATCTAGAAAAGAACCAGACTTAAATTTTTATTCACCAAAGGATAAACGAGATACAAGTACTCCATTAGCCTATGGTAAAACTTTAAAGAAACTTATAGCTGATGGAGATCTTAGCAAAGCAAACAAAGATTTCTTACTTAATCTAATGTTCAAAAATAAAAGTGGCGATACATTAATTAAGGATGGTGCACCTTCAAACTTTAAAGTTATGGATAAGAGCGGTCAAGCACTAACATACGGTTCAAGAAACGATGTTGCGTTTGTTTATCCAGATGGACAAGATAAACCTATAATTCTGGTGATATTTACAAATAAAGATAGAAAAGATGGTAAACCTAATGACAAAATAGTAAGTGAGGTTGCTGAAATTGTACTAAAAAATATTAATGAGTAA\n+>1amr___(betalactams)BLAZ|Bla|blaZ_40_DQ269019|betalactams|Class_A_betalactamases|BLAZ\n+TTGAAAAAGTTAATATTTTTAATTGCAATTGCTTTAGTTTTAAGTGCATGTAATTCAARCAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATG'..b'TCGCCATCCAAGTT\n+>508amr___(Phenicol)CATP|Phe|catP_1_U15027|Phenicol|Chloramphenicol_acetyltransferases|CATP\n+ATGGTATTTGAAAAAATTGATAAAAATAGTTGGAACAGAAAAGAGTATTTTGACCACTACTTTGCAAGTGTACCTTGTACATACAGCATGACCGTTAAAGTGGATATCACACAAATAAAGGAAAAGGGAATGAAACTATATCCTGCAATGCTTTATTATATTGCAATGATTGTAAACCGCCATTCAGAGTTTAGGACGGCAATCAATCAAGATGGTGAATTGGGGATATATGATGAGATGATACCAAGCTATACAATATTTCACAATGATACTGAAACATTTTCCAGCCTTTGGACTGAGTGTAAGTCTGACTTTAAATCATTTTTAGCAGATTATGAAAGTGATACGCAACGGTATGGAAACAATCATAGAATGGAAGGAAAGCCAAATGCTCCGGAAAACATTTTTAATGTATCTATGATACCGTGGTCAACCTTCGATGGCTTTAATCTGAATTTGCAGAAAGGATATGATTATTTGATTCCTATTTTTACTATGGGGAAATATTATAAAGAAGATAACAAAATTATACTTCCTTTGGCAATTCAAGTTCATCACGCAGTATGTGACGGATTTCACATTTGCCGTTTTGTAAACGAATTGCAGGAATTGATAAATAGTTAA\n+>508amr___(Phenicol)CATP|Phe|CatD|X15110|91-729|639|Phenicol|Chloramphenicol_acetyltransferases|CATP\n+ATGGTATTTGAAAAAATTGATAAAAATAGTTGGAACAGAAAAGAGTATTTTGACCACTACTTTGCAAGTGTACCTTGTACATACAGCATGACCGTTAAAGTGGATATCACACAAATAAAGGAAAAGGGAATGAAACTATATCCTGCAATGCTTTATTATATTGCAATGATTGTAAACCGCCATTCAGAGTTTAGGACGGCAATCAATCAAGATGGTGAATTGGGGATATATGATGAGATGATACCAAGCTATACAATATTTCACAATGATACTGAAACATTTTCCAGCCTTTGGACTGAGTGTAAGTCTGACTTTAAATCATTTTTAGCAGATTATGAAAGTGATACGCAACGGTATGGAAACAATCATAGAATGGAAGGAAAGCCAAATGCTCCGGAAAACATTTTTAATGTATCTATGATACCGTGGTCAACCTTCGATGGCTTTAATCTGAATTTGCAGAAAGGATATGATTATTTGATTCCTATTTTTACTATGGGGAAAATTATAAAGAAGGATAACAAAATTATACTTCCTTTGGCAATTCAAGTTCATCACGCAGTATGTGACGGATTTCACATTTGCCGTTTTGTAAACGAATTGCAGGAATTGATAATAGTTACTCAGGTTTGTCTGTAA\n+>509amr___(Tetracyclines)TCR3|CARD|phgb|D38215|0-1539|ARO:3002893|tcr3|Tetracyclines|Tetracycline_resistance_major_facilitator_superfamily_MFS_efflux_pumps|TCR3\n+ATGGGAATGGCGAACGCCACCTCGCAGACCGGCGAGGCCGTCGCGGACGAGGCCGGCGGCCCCGCCGGCTTCACTCACCGCCAGATCATCACCGCGCTGTCCGGGCTCCTGTTGGCCGTGCTGCTCGCCGCACTCGACCAGACGATCGTCTCCACCGCGCTGCGTACGATCGGCGACCAACTGCACGGCCAGACCGTCCAGGCCTGGGTGATCACCGGCTACCTGGTCAGCTCCACGATCGCGATGCCGTTCTACGGCAAGCTGTCCGACATCTACGGCCGCAAGCCGCTCTATCTGGCGGCGATCGCGGTCTTCATCGTCGGCTCGGCGGCCTGCGCGATGGCGAACTCGATGGAGACGCTGGCGATCGCCCGCGTCCTCCAGGGCTTCGGCGGCGCCGGGCTGATGTCGCTGCCGACGGCCGTCATCGCCGACCTCGCCCCGGTGCGCGAGCGCGGGCGCTACTTCTCGTACCTGATGATGGCCTGGGTGGCGGCCAGTGTGCTCGGCCCGCTCGTCGGGGGCCTGTTCGCGGGCGCCGGCGAGATCCTCGGGGTGACCGGCTGGCGCTGGGCCTTCCTGATCAACGTGCCGCTCGGTCTCGTGGCGCTGCTCAGCGTGCGCAAGGCGCTCAACCTGCCGCACCGCAGGGTGGACCACCCGATCGACTTCCGGGGGGCGCTCACCCTGGCGCTCTGCCTGGTGCCGCTGCTGATCGTGGCGGAGGAGGGCCTCGACTGGGGCTGGGGATCGGCGCGTTCGCTGACGCTGTTCGCCGTCTCGCTGATCGGCCTGGTGCTGTTCGTGCTCGCCGAGCGGGCCCGCGGGCTGGAGGCGATGGTCCCGCTGCGGCTGTTCCGGCGCGGTGGCATCACGATGGCCACGGCCGTCAACTTCACCATCGGCGTCGGCATCTTCGGTACGGTCTCCACCCTGCCGCTGTTCCTGCAGCTGGTGCAGGGGCGCAGTGCCACCGTCGCCGGACTGGTGATCATCCCGGTGATGACCGGGGCGATCGTCTCCCAGACGATCTGCGCCAAGATCATCAAGAAGTGGAACCGCTACAAGAAGCCCGCGATCGTGGGCCTCGGCTCGATGGCCGGAGCACTGCTGTCGCTCTCCGCCGCGGGCGCGGACACCCCGCTCGCGGTGATCGTGGTGATCGCGGCCTGGCTGGGCTTCGGCATCGGGCTCTCCCAGACCGTCATCACCCTGGCGATCCAGAGCTCGGCGCCCAAGTCCGAGCTGGGCGTGGCCAACGCCGCCTCCGGGCTGTTCCGCCAGCTCGGCGGCACGAGCGGCGCCGCCGTCTTCATGTCGGTGCTGTTCGGCGTCGCCGCCGGCAGGCTCGACGGGGCCGACCCGGACGAGGCCGTGCGCCGTGCGCTCTCCGACCCGGGCTCCACCGGCGGCCTGAGCGCCTCGGCGGTCGACGCCTTCACCTCGGGCTTCGACACGATGTTCCTGGTCGGCGGCCTGATCCTTGCGGTGGGCTTCCTGCTCACCTTCCCGCTGCGGGAACTGCGCGACGAGGAGTGA\n+>510amr___(betalactams)SFH1|CARD|phgb|AF197943|0-705|ARO:3000849|Sfh-1|betalactams|Class_B_betalactamases|SFH1\n+ATGGCTTCTGAAAAAAACTTAACGCTTACCCATTTCAAAGGTCCGCTCTATATTGTAGAAGATAAGGAGTATGTACAGGAAAACTCAATGGTTTACATCGGCACCGATGGTATAACCATCATTGGTGCGACATGGACTCCTGAGACTGCTGAAACTCTTTATAAAGAAATACGGAAGGTCAGCCCCCTCCCCATAAACGAAGTCATTAATACCAATTACCATACTGATCGAGCTGGTGGAAATGCTTATTGGAAAACGCTTGGGGCAAAGATCGTGGCCACACAGATGACCTACGACCTGCAGAAAAGCCAGTGGGGAAGTATTGTAAACTTCACTCGACAAGGTAATAATAAATACCCAAATCTGGAGAAAAGTCTGCCGGATACTGTTTTTCCTGGAGACTTTAACTTGCAAAATGGCAGCATCCGCGCCATGTATTTAGGCGAAGCACATACTAAGGATGGTATCTTTGTGTACTTCCCAGCAGAGCGCGTTTTGTATGGGAACTGCATTCTCAAAGAAAATCTGGGTAATATGAGTTTTGCCAACAGAACTGAGTACCCAAAAACCTTGGAAAAACTTAAAGGACTTATCGAGCAGGGGGAGCTTAAAGTCGACTCGATCATTGCAGGGCATGATACTCCGATACATGACGTAGGCCTGATCGATCACTACCTTACACTGCTTGAGAAGGCGCCTAAGTAA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1464 @@\n+ST\tglp\tgmk\tilv\tpta\tpur\tpyc\ttpi\tclonal_complex\n+1\t1\t1\t1\t1\t1\t1\t1\t\n+2\t1\t1\t2\t1\t1\t2\t1\t\n+3\t2\t1\t1\t1\t1\t1\t1\t\n+4\t13\t8\t8\t11\t11\t12\t7\tST-142 complex\n+5\t6\t4\t3\t4\t14\t4\t3\t\n+6\t4\t3\t4\t6\t13\t5\t6\t\n+7\t5\t4\t3\t4\t15\t6\t7\t\n+8\t7\t8\t16\t13\t2\t16\t7\tST-8 complex\n+9\t15\t7\t7\t2\t5\t16\t13\tST-23 complex\n+10\t15\t6\t10\t8\t3\t7\t14\t\n+11\t34\t1\t32\t1\t33\t37\t24\tST-365 complex\n+12\t15\t7\t7\t2\t7\t10\t13\tST-23 complex\n+13\t10\t8\t15\t12\t2\t16\t7\tST-8 complex\n+14\t14\t8\t9\t7\t10\t15\t10\t\n+15\t9\t8\t16\t13\t2\t16\t9\tST-8 complex\n+16\t15\t7\t7\t2\t6\t8\t13\tST-23 complex\n+17\t12\t8\t11\t11\t9\t13\t5\t\n+18\t11\t9\t14\t12\t12\t14\t7\tST-18 complex\n+19\t12\t8\t9\t11\t11\t12\t8\t\n+20\t16\t6\t12\t9\t4\t11\t15\t\n+21\t18\t9\t5\t15\t17\t9\t11\t\n+22\t12\t8\t8\t11\t9\t12\t23\tST-142 complex\n+23\t15\t7\t7\t2\t5\t8\t13\tST-23 complex\n+24\t12\t8\t9\t14\t11\t12\t10\t\n+25\t30\t8\t16\t13\t2\t16\t7\tST-8 complex\n+26\t3\t2\t31\t5\t16\t3\t4\t\n+27\t34\t1\t17\t16\t18\t33\t24\tST-365 complex\n+28\t19\t2\t18\t17\t19\t3\t2\tST-205 complex\n+29\t20\t8\t8\t35\t8\t17\t17\t\n+30\t17\t5\t6\t3\t9\t34\t12\t\n+31\t21\t2\t19\t5\t16\t18\t2\t\n+32\t5\t4\t3\t4\t15\t6\t16\t\n+33\t22\t9\t18\t18\t20\t19\t7\t\n+34\t33\t8\t13\t19\t2\t17\t17\t\n+35\t23\t10\t5\t15\t21\t23\t11\t\n+36\t18\t11\t3\t20\t22\t22\t18\t\n+37\t18\t10\t14\t20\t22\t22\t18\t\n+38\t24\t12\t50\t21\t23\t31\t19\t\n+39\t37\t9\t18\t12\t24\t21\t7\t\n+40\t39\t9\t14\t12\t24\t14\t7\tST-18 complex\n+41\t25\t10\t22\t36\t26\t23\t11\t\n+42\t26\t21\t12\t25\t27\t32\t18\tST-336 complex\n+43\t27\t20\t23\t8\t4\t24\t21\t\n+44\t11\t9\t14\t12\t2\t25\t7\tST-18 complex\n+45\t19\t14\t21\t5\t19\t3\t2\tST-205 complex\n+46\t33\t8\t13\t10\t8\t17\t7\t\n+47\t29\t2\t24\t5\t32\t3\t22\t\n+48\t13\t8\t25\t11\t9\t35\t10\tST-142 complex\n+49\t15\t7\t15\t2\t7\t10\t13\tST-23 complex\n+50\t13\t16\t9\t28\t4\t12\t8\t\n+51\t31\t9\t14\t29\t28\t27\t7\t\n+52\t32\t19\t26\t30\t9\t28\t10\t\n+53\t33\t17\t27\t31\t29\t17\t7\t\n+54\t11\t9\t14\t32\t12\t14\t7\tST-18 complex\n+55\t15\t7\t8\t2\t7\t26\t13\tST-23 complex\n+56\t15\t7\t7\t2\t7\t26\t13\tST-23 complex\n+57\t34\t15\t28\t33\t30\t29\t24\t\n+58\t35\t6\t29\t9\t4\t7\t21\t\n+59\t22\t9\t30\t18\t20\t21\t7\t\n+60\t36\t15\t28\t34\t30\t29\t25\t\n+61\t15\t7\t7\t27\t7\t26\t13\tST-23 complex\n+62\t38\t1\t32\t1\t18\t33\t24\tST-365 complex\n+63\t15\t24\t29\t11\t4\t39\t28\t\n+64\t33\t8\t36\t19\t41\t17\t27\t\n+65\t15\t7\t14\t2\t6\t14\t13\tST-23 complex\n+66\t40\t9\t14\t26\t37\t36\t7\t\n+67\t15\t7\t34\t2\t5\t10\t13\tST-23 complex\n+68\t22\t9\t34\t18\t20\t40\t29\t\n+69\t15\t7\t36\t2\t5\t8\t13\tST-23 complex\n+70\t15\t7\t36\t2\t37\t8\t13\tST-23 complex\n+71\t41\t25\t12\t9\t4\t12\t15\t\n+72\t43\t26\t35\t40\t39\t41\t30\tST-111 complex\n+73\t13\t8\t9\t14\t9\t12\t31\tST-142 complex\n+74\t42\t27\t37\t41\t40\t42\t32\t\n+75\t44\t1\t32\t1\t18\t33\t24\tST-365 complex\n+76\t34\t15\t28\t38\t30\t29\t33\t\n+77\t3\t23\t38\t39\t38\t43\t34\t\n+78\t24\t22\t33\t37\t34\t38\t5\t\n+79\t7\t2\t14\t4\t2\t3\t15\t\n+80\t37\t9\t21\t5\t19\t21\t4\t\n+81\t3\t2\t19\t5\t36\t18\t2\t\n+82\t45\t21\t20\t22\t42\t20\t26\t\n+83\t63\t13\t58\t23\t25\t44\t35\t\n+84\t46\t9\t39\t29\t24\t45\t7\t\n+85\t47\t28\t14\t12\t2\t36\t7\t\n+86\t33\t8\t13\t19\t8\t17\t17\t\n+87\t109\t18\t120\t24\t31\t30\t20\t\n+88\t18\t10\t22\t15\t35\t9\t11\t\n+89\t14\t8\t40\t19\t2\t17\t17\t\n+90\t6\t4\t41\t5\t43\t46\t3\t\n+91\t51\t2\t21\t5\t19\t3\t38\tST-205 complex\n+92\t6\t4\t42\t4\t16\t6\t3\t\n+93\t14\t29\t43\t11\t9\t47\t8\t\n+94\t13\t29\t9\t14\t9\t12\t31\t\n+95\t13\t29\t9\t11\t2\t12\t8\t\n+96\t33\t8\t44\t19\t2\t17\t17\t\n+97\t15\t6\t47\t8\t4\t8\t7\tST-97 complex\n+98\t40\t28\t14\t12\t2\t50\t7\t\n+99\t13\t8\t9\t14\t46\t12\t31\t\n+100\t13\t8\t46\t28\t9\t12\t7\tST-142 complex\n+101\t33\t33\t44\t19\t2\t17\t17\t\n+102\t49\t31\t45\t43\t45\t49\t37\t\n+103\t24\t12\t50\t21\t23\t31\t40\t\n+104\t24\t12\t33\t37\t48\t31\t19\t\n+105\t55\t12\t33\t47\t49\t31\t41\t\n+106\t56\t1\t51\t1\t50\t52\t24\t\n+107\t57\t1\t52\t1\t1\t52\t1\t\n+108\t38\t1\t32\t16\t18\t33\t24\tST-365 complex\n+109\t34\t1\t32\t1\t51\t37\t24\tST-365 complex\n+110\t61\t38\t55\t1\t1\t53\t19\t\n+111\t43\t26\t35\t42\t39\t41\t30\tST-111 complex\n+112\t57\t1\t56\t1\t1\t54\t42\t\n+113\t62\t1\t57\t52\t55\t37\t43\t\n+114\t8\t10\t105\t36\t17\t70\t11\t\n+115\t64\t10\t9\t36\t56\t22\t11\tST-196 complex\n+116\t25\t10\t22\t53\t57\t23\t44\t\n+117\t15\t6\t29\t46\t4\t8\t39\tST-97 complex\n+118\t47\t28\t14\t26\t2\t36\t7\t\n+119\t47\t8\t49\t12\t2\t36\t7\t\n+120\t6\t4\t3\t4\t46\t6\t36\t\n+121\t53\t2\t59\t54\t47\t3\t2\t\n+122\t53\t2\t59\t17\t47\t3\t2\t\n+123\t48\t30\t33\t37\t44\t48\t45\t\n+124\t14\t32\t48\t45\t58\t51\t7\t\n+125\t58\t34\t53\t48\t52\t20\t26\t\n+126\t45\t35\t20\t49\t42\t20\t26\t\n+127\t6\t4\t53\t4\t16\t6\t3\t\n+128\t59\t36\t54\t50\t53\t56\t26\t\n+129\t34\t1\t60\t1\t51\t55\t24\tST-365 complex\n+130\t65\t1\t1\t1\t1\t37\t1\t\n+131\t60\t37\t61\t51\t54\t57\t46\t\n+132\t24\t22\t33\t55\t59\t58\t47\t\n+133\t66\t36\t62\t56\t53\t59\t32\t\n+134\t1\t1\t1\t57\t1\t1\t1\t\n+135\t1\t39\t1\t1\t1\t1\t1\t\n+136\t31\t8\t14\t44\t2\t36\t7\t\n+137\t37\t28\t14\t12\t37\t36\t7\t\n+138\t37\t9\t14\t12\t12\t14\t7\tST-18 complex\n+139\t50\t8\t14\t12\t12\t36\t7\tST-18 complex\n+140\t52\t2\t21\t5\t19\t3\t38\tST-205 complex\n+141\t54'..b'4\t8\t8\t19\t29\t17\t10\t\n+1336\t13\t2\t8\t11\t9\t12\t7\tST-142 complex\n+1337\t242\t2\t8\t12\t2\t17\t17\t\n+1338\t3\t2\t8\t5\t16\t3\t4\t\n+1339\t93\t6\t23\t9\t242\t198\t15\t\n+1340\t3\t2\t9\t5\t36\t3\t4\t\n+1341\t127\t27\t276\t126\t131\t42\t100\t\n+1342\t229\t5\t271\t126\t16\t183\t190\t\n+1343\t67\t2\t8\t5\t36\t3\t4\t\n+1344\t67\t2\t9\t5\t36\t3\t4\t\n+1345\t229\t5\t271\t240\t11\t183\t190\t\n+1346\t109\t18\t120\t24\t31\t30\t175\t\n+1347\t67\t8\t8\t5\t36\t3\t4\t\n+1348\t15\t7\t7\t2\t96\t26\t13\tST-23 complex\n+1349\t36\t15\t28\t1\t30\t29\t25\t\n+1350\t253\t142\t269\t180\t237\t149\t37\t\n+1351\t254\t30\t277\t37\t44\t199\t5\t\n+1352\t40\t9\t53\t12\t16\t6\t7\t\n+1353\t37\t9\t14\t12\t36\t183\t7\tST-18 complex\n+1354\t6\t26\t53\t4\t16\t6\t3\t\n+1355\t40\t9\t14\t12\t12\t14\t7\tST-18 complex\n+1356\t48\t30\t33\t5\t44\t103\t5\t\n+1357\t67\t2\t63\t5\t16\t3\t4\t\n+1358\t67\t2\t63\t37\t36\t3\t4\t\n+1359\t3\t2\t59\t5\t19\t3\t2\tST-205 complex\n+1360\t209\t4\t3\t4\t14\t4\t3\t\n+1361\t40\t9\t14\t12\t9\t14\t7\tST-18 complex\n+1362\t6\t4\t42\t4\t19\t3\t181\t\n+1363\t40\t26\t3\t4\t15\t6\t16\t\n+1364\t6\t4\t42\t4\t36\t6\t181\t\n+1365\t13\t8\t8\t11\t12\t12\t7\tST-142 complex\n+1366\t19\t2\t21\t5\t19\t3\t183\tST-205 complex\n+1367\t19\t2\t42\t4\t16\t6\t181\t\n+1368\t67\t2\t63\t4\t36\t3\t4\t\n+1369\t5\t4\t3\t5\t15\t6\t16\t\n+1370\t22\t9\t18\t18\t60\t19\t7\t\n+1371\t59\t35\t31\t22\t72\t95\t26\t\n+1372\t12\t2\t31\t5\t16\t3\t4\t\n+1373\t117\t4\t3\t4\t15\t6\t16\t\n+1374\t7\t9\t14\t12\t2\t36\t7\tST-18 complex\n+1375\t3\t2\t31\t5\t20\t3\t4\t\n+1376\t19\t2\t234\t5\t19\t3\t2\tST-205 complex\n+1377\t3\t2\t31\t4\t16\t3\t4\t\n+1378\t21\t2\t86\t5\t32\t18\t2\t\n+1379\t15\t26\t23\t235\t43\t12\t7\t\n+1380\t22\t26\t18\t220\t20\t12\t7\t\n+1381\t117\t26\t18\t220\t20\t12\t7\t\n+1382\t15\t20\t23\t8\t4\t12\t7\tST-97 complex\n+1383\t110\t26\t111\t102\t112\t12\t90\t\n+1384\t81\t26\t18\t220\t20\t12\t90\t\n+1385\t81\t1\t117\t71\t113\t12\t80\t\n+1386\t102\t1\t33\t37\t44\t12\t10\t\n+1387\t14\t26\t3\t4\t46\t12\t4\t\n+1388\t117\t26\t3\t4\t46\t12\t36\t\n+1389\t145\t1\t1\t1\t18\t12\t24\tST-365 complex\n+1390\t48\t26\t33\t37\t44\t12\t5\t\n+1391\t6\t26\t3\t4\t43\t12\t90\t\n+1392\t48\t26\t33\t37\t44\t12\t7\t\n+1393\t6\t26\t3\t4\t14\t12\t3\t\n+1394\t6\t2\t53\t4\t16\t12\t3\t\n+1395\t34\t1\t71\t16\t33\t33\t24\tST-365 complex\n+1396\t6\t4\t41\t5\t43\t12\t3\t\n+1397\t117\t26\t123\t118\t43\t12\t181\t\n+1398\t117\t26\t3\t4\t15\t12\t16\t\n+1399\t48\t26\t118\t62\t66\t12\t52\t\n+1400\t94\t2\t154\t5\t32\t12\t22\t\n+1401\t43\t26\t18\t42\t39\t12\t88\tST-111 complex\n+1402\t81\t26\t117\t111\t113\t12\t80\t\n+1403\t15\t20\t29\t8\t4\t12\t39\t\n+1404\t15\t20\t23\t9\t4\t12\t7\t\n+1405\t15\t7\t268\t2\t93\t12\t13\tST-23 complex\n+1406\t59\t35\t106\t118\t102\t12\t48\t\n+1407\t68\t20\t23\t8\t4\t12\t170\t\n+1408\t15\t6\t23\t235\t4\t12\t39\t\n+1409\t102\t109\t107\t22\t96\t12\t48\t\n+1410\t15\t25\t23\t235\t4\t12\t39\t\n+1411\t43\t26\t1\t42\t39\t12\t7\tST-111 complex\n+1412\t15\t20\t29\t8\t4\t8\t39\tST-97 complex\n+1413\t256\t8\t43\t11\t9\t104\t8\t\n+1414\t145\t1\t278\t1\t18\t52\t24\tST-365 complex\n+1415\t145\t1\t1\t1\t18\t200\t24\tST-365 complex\n+1416\t3\t2\t31\t6\t16\t3\t4\t\n+1417\t177\t2\t21\t5\t114\t3\t55\tST-205 complex\n+1418\t209\t22\t238\t4\t239\t172\t5\t\n+1419\t94\t2\t154\t5\t32\t3\t114\t\n+1420\t62\t1\t93\t109\t55\t102\t210\t\n+1421\t38\t1\t1\t1\t18\t33\t24\tST-365 complex\n+1422\t34\t1\t32\t16\t51\t33\t24\tST-365 complex\n+1423\t13\t151\t279\t11\t9\t12\t8\tST-142 complex\n+1424\t33\t8\t146\t260\t2\t17\t7\t\n+1425\t257\t76\t135\t127\t243\t115\t98\t\n+1426\t34\t1\t93\t17\t18\t33\t24\tST-365 complex\n+1427\t124\t76\t135\t127\t244\t115\t98\t\n+1428\t44\t1\t32\t214\t18\t33\t24\tST-365 complex\n+1429\t34\t1\t71\t1\t18\t201\t89\tST-365 complex\n+1430\t34\t1\t32\t214\t18\t33\t24\tST-365 complex\n+1431\t13\t8\t8\t11\t9\t12\t10\tST-142 complex\n+1432\t201\t36\t8\t210\t196\t176\t32\t\n+1433\t145\t1\t83\t1\t55\t37\t43\t\n+1434\t34\t1\t32\t70\t18\t33\t24\tST-365 complex\n+1435\t6\t4\t41\t4\t43\t5\t36\t\n+1436\t12\t8\t68\t30\t9\t12\t10\t\n+1437\t247\t1\t83\t1\t55\t37\t43\t\n+1438\t51\t14\t21\t5\t19\t3\t55\tST-205 complex\n+1439\t13\t8\t9\t201\t148\t12\t8\t\n+1440\t122\t28\t9\t14\t9\t12\t10\t\n+1441\t47\t9\t14\t12\t2\t50\t7\tST-18 complex\n+1442\t12\t8\t8\t7\t9\t12\t10\tST-142 complex\n+1443\t19\t2\t234\t5\t208\t18\t2\tST-205 complex\n+1444\t152\t10\t5\t218\t151\t136\t11\t\n+1445\t64\t10\t22\t36\t57\t23\t168\t\n+1446\t33\t126\t13\t19\t29\t17\t10\t\n+1447\t216\t129\t223\t225\t118\t171\t128\t\n+1448\t172\t71\t280\t29\t24\t14\t7\t\n+1449\t215\t116\t281\t170\t207\t144\t172\t\n+1450\t218\t87\t104\t69\t103\t202\t18\t\n+1451\t221\t131\t243\t227\t211\t203\t177\t\n+1452\t23\t10\t5\t216\t201\t205\t11\t\n+1453\t206\t1\t285\t214\t18\t29\t19\t\n+1454\t208\t8\t283\t45\t58\t87\t7\t\n+1455\t64\t10\t284\t36\t57\t23\t11\tST-196 complex\n+1456\t220\t118\t282\t226\t210\t185\t176\t\n+1457\t212\t128\t287\t222\t203\t204\t65\t\n+1458\t210\t8\t68\t11\t245\t12\t10\t\n+1459\t207\t1\t286\t1\t1\t37\t42\t\n+1460\t258\t71\t14\t26\t225\t50\t7\t\n+1461\t259\t57\t81\t80\t90\t90\t32\t\n+1462\t13\t8\t8\t11\t9\t12\t211\tST-142 complex\n+1463\t126\t152\t133\t190\t178\t114\t140\t\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/glp.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/glp.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,2072 @@\n+>glp_1\n+GCAGCGTACGTGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGGGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_2\n+GCAGCGTACGTGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGGGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGACCACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_3\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGCTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_4\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAGGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_5\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAGGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_6\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACATTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_7\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_8\n+GCAGCGTATGCAGTTGGATCAATTAGTGGGGCACATTTGAATCCGGCTTTAACGATAGGA\n+CTTGCGTTTAAGGGAGCGTTCCCATGGAGTGATGTACCTATGTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTCTTGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTACAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTTGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_9\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGATCATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_10\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_11\n+GCAGCGTATGCGGTTGGATCAATTAGTGG'..b'TTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_250\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_251\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+CTTGCTTTTAAGGGAGCGTTCCCATGGAGTGATGTACCTATGTATATCGCAGCACAAATG\n+ATTGGAGCAATTATCGGGGCAGTTATCGTATATTTACACTACTTACCACATTGGAAAGAA\n+ACAGAAGATCCAGGAACGAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGAGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_252\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGTAGCACAAATG\n+ATTGGGGCAATTATTGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_253\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGG\n+CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGTGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGAGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_254\n+GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGCGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_255\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACAAA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_256\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCGTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGTAGCACAAATG\n+ATTGGGGCAATTATTGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_257\n+GCAGCGTATGCAGTTGGATCAATTAGTGGGGCGCATTTGAATCCGGCTTTAACGATAGGA\n+TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTCTTGTATATTTACATTACTTACCGCACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAATTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTACAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTAGGTTTCTTAATCGTA\n+AGTATTGGTTTA\n+>glp_258\n+GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n+CTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n+AGTATTGGTTTA\n+>glp_259\n+GCAGCGTACGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n+CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGCAGCACAAATG\n+ATTGGGGCAATTATCGGGGCAGTTCTTGTATACTTACATTACTTACCACACTGGAAAGAA\n+ACAGAAGATCCAGGAACAAAATTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n+TTTACAAACCTTTTGAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n+ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTAGGTTTCTTAATCGTA\n+AGTATTGGTTTA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/gmk.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/gmk.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1520 @@\n+>gmk_1\n+GTTCTTTCAGGACCTTCTGGTGTTGGGAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n+GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTGCAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n+AACGACCAAGTTGAACTAGCTTGT\n+>gmk_2\n+GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n+GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n+AACGACCAAGTTGAACTAGCTTGT\n+>gmk_3\n+GTTCTTTCAGGACCTTCTGGGGTTGGTAAGGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n+GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n+AACGACCAAGTTGAACTAGCTTGT\n+>gmk_4\n+GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n+GAGGATACACGTTTTCAGTATTCCATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n+AACGACCAAGTTGAACTAGCTTGT\n+>gmk_5\n+GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n+GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCCCCAAGTTTA\n+TCTGAACTAAAGAACCGTATTGTCGGCCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATCGAAATGATGGACGCTTACGACTATGTTGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_6\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_7\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGCCGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_8\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACAT'..b'\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAAAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_146\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_147\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAACCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_148\n+GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTATTTAGTCAT\n+GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n+GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCGCCTCCAAGTTTA\n+TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n+CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n+AACGACCAAGTTGAACTAGCTTGT\n+>gmk_149\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCATAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_150\n+GTTCTTTCAGGGCCTTCTGGGGTGGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGCCGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_151\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACCCGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n+>gmk_152\n+GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n+GAGGATACACGTTTTCAATACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n+GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n+GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n+GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n+ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n+TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n+CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n+AACGATCAAGTTGAATTAGCTTGT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/ilv.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/ilv.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,2296 @@\n+>ilv_1\n+GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n+AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGTAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_2\n+GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n+AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGCAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_3\n+GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTCGCGAAAGATGGAGCAGTTATTAAA\n+AGCGGAGCAACTGAAGTAAAACGATTTGAAGGACCATGCGTTATTTTTAATTCACAAGAT\n+GAGGCTCTTGCGGGTATTATGCTTGGGAAAGTGAAGAAAGGAGATGTAGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n+GCTGGCATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCGGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGGACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_4\n+GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGGGCAGTTATCAAA\n+AGCGGAGCGACCGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCGGGTATTATGCTTGGGAAAGTGAAGAAAGGAGATGTAGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n+GCTGGCATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGGACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_5\n+GAAGAAGGAGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n+AGCGGAGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTTAAGAAAGGAGATGTAGTTGTTATTCGC\n+TATGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACATCAGCAATT\n+GCTGGTATGGGATTAGGAGCAGATGTTGCACTTTTAACTGATGGTCGCTTCTCTGGTGCT\n+TCACGTGGTATTTCGGTAGGGCACATTTCACCAGAAGCAGCAGCTGGCGGAACGATTGCA\n+CTTCTTGAACAAGGAGATATTGTATGTATTGAT\n+>ilv_6\n+GAAGAAGGGGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGACGGAGCAGTTATTAAA\n+AGCGGTGCAACTGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGTCCTGGTATGCCAGAAATGTTAGCACCAACATCAGCAATT\n+GCTGGTATGGGATTAGGTGCAGATGTTGCACTATTAACGGATGGTCGTTTCTCTGGAGCT\n+TCACGTGGTATTTCGGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTCAAGCAAGGGGATATCGTTTGTATCGAT\n+>ilv_7\n+GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGAGCGGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCGGGCATTATGCTTGGAAAAGTGAAGAAAGGCGATGTAGTTGTTATTCGC\n+TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAGATGTTAGCGCCAACTTCAGCGATT\n+GCTGGAATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCGGGTGCT\n+TCACGTGGTATTTCAGTAGGACATATTTCACCAGAAGCAGCTGCGGGTGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n+>ilv_8\n+GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCGGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGGCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n+GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n+TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n+CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n+>ilv_9\n+GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCGGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n+GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n+TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n+CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n+>ilv_10\n+GAGGAAGGAGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGATGGAGCAGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAA'..b'AAAGGAGATGTAGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACTGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGTAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_279\n+GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCAGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGGCCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n+GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n+TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n+CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n+>ilv_280\n+GAGGAAGGAGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGATGGAGCGGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAACATCAGCAATT\n+GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACGGATGGACGTTTCTCTGGGGCT\n+TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCTGGTGGAACGATCGCA\n+CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n+>ilv_281\n+GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGGGCAGTTATTAAA\n+AGCGGGGCAACCGAGGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCGGGCATTATGCTTGGAAAAGTGAAAAAAGGAGATGTCGTTGTTATTCGT\n+TATGAAGGACCAAGAGGCGGCCCTGGTATGCCAGAAATGTTAGCTCCGACGTCAGCAATT\n+GCCGGCATGGGATTAGGTGCTGATGTTGCGCTATTAACGGATGGACGTTTCTCCGGTGCT\n+TCACGTGGTATTTCGGTAGGACATATTTCACCGGAAGCAGCTGCAGGTGGAACGATTGCT\n+CTTCTTGAGAAAGGGGATATAGTTTGTATTGAT\n+>ilv_282\n+GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n+AGTGGGGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTCAAGAAAGGAGATGTAGTTGTTATTCGT\n+TACGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n+GCTGGCATGGGATTGGGGGCAGATGTTGCACTTTTAACTGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCGGTAGGGCATATTTCACCAGAAGCAGCTGCGGGAGGAACGATTGCA\n+CTTCTGGAACAAGGGGATATAGTTTGTATTGAT\n+>ilv_283\n+GAGGAAGGAGGATTGCGTATATTAAAAGGAAACCTTGCGAAAGATGGAGCTGTTATTAAA\n+AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGTATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCGGGTGCT\n+TCACGTGGTATTTCAGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_284\n+GAAGAAGGAGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n+AGCGGAGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTTAAGAAAGGAGATGTAGTTGTTATTCGC\n+TATGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACATCAGCAATT\n+GCTGGTATGGGATTAGGAGCAGATGTTGCACTTTTAACTGATGGTCGCTTCTCTGGTGCT\n+TCACGTGGTATTTCGGTAGGGCACATTTCACCAGAAGCAGCAGCTGGCGGAACGATTGCA\n+ATTCTTGAACAAGGAGATATTGTATGTATTGAT\n+>ilv_285\n+GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n+AGCGGGGCAACCGAAGTAAAACGATTTGAAGGGCCTTGTGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGAAAGGTTAAGAAAGGAGATGTAGTTATTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCAGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGCATGGGATTAGGTGCGGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_286\n+GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n+AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n+GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTATTATTCGT\n+TATGAAGGACCAAGAGGCGGTCCAGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n+GCTGGCATGGGATTAGGTGCGGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n+TCACGTGGTATTTCAGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n+CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n+>ilv_287\n+GAAGAGGGGGGCTTACGTATTTTAAAAGGAAATCTAGCGAAAGATGGAGCGGTTATTAAA\n+AGTGGGGCAACCGAAGTAAAACGATTTGAAGGACCGTGCGTTATTTTTAATTCACAAGAT\n+GAGGCACTTGCCGGCATTATGCTTGGGAAAGTAAAAAAAGGAGATGTAGTTGTCATTCGT\n+TATGAAGGGCCAAGAGGCGGACCAGGTATGCCTGAAATGTTAGCACCAACATCAGCAATC\n+GCTGGTATGGGATTAGGTGCTGAGGTTGCATTATTAACGGACGGACGTTTCTCTGGAGCT\n+TCACGTGGCATTTCGGTAGGACATATTTCACCAGAAGCAGCTGCGGGTGGAACAATCGCA\n+CTACTTGAACAAGGAGATATTGTATGTATTGAT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/pta.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/pta.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,2080 @@\n+>pta_1\n+AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACAGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTTGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACTGCTGAACTATTCGGTATTGACCCACGCGTT\n+>pta_2\n+AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATATGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCAAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n+>pta_3\n+AATTTAACATTAGCAGGCGTTGATATTTATGATCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGTGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n+>pta_4\n+AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n+>pta_5\n+AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGTGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n+>pta_6\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCGGCTCATTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n+>pta_7\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACAGCTGAGTTATTCGGCATTGATCCACGCGTT\n+>pta_8\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCGGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n+>pta_9\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCGGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n+>pta_10\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACG'..b'\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n+>pta_252\n+AATTTAACATTAGCAGGCATTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n+>pta_253\n+AACTTAACATTAGCAGGTGTTGATATTTATGATCCAGCTACATATGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGGAAAGCGACAGAAGAAGATGCACGTAAA\n+ATCCTTAAAGACGAAAACTACTTTGGTACAATGCTTGTATACATGGGTAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCATTCTACAGCTGACACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGTGTTACAAAAACTTCAGGCGTATTCATCATGGTACGTGAAGATGAG\n+AAATATGTATTCGCTGATTGCGCAATCAATATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATTGAAAGTGCGAAAACTGCTGAGTTATTCGGCATCGATCCACGTGTT\n+>pta_254\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACAGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATC\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTGCGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACAGCTGAACTATTCGGTATTGATCCACGTGTT\n+>pta_255\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGACGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n+>pta_256\n+AATTTAACATTAGCAGGCGTTGATATTTTCGACCCAGCTACATACGAAGAAATGGATACA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATC\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTGCGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACAGCTGAACTATTCGGTATTGATCCACGCGTT\n+>pta_257\n+AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATATGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTTGGTATTGACCCACGCGTT\n+>pta_258\n+AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGTCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n+>pta_259\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCTAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n+>pta_260\n+AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n+ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n+ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n+TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n+AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n+AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n+ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/pur.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/pur.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1715 @@\n+>pur_1\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACATGGCAAGGAATTATCG\n+TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n+GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n+>pur_2\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGCTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACGTCTTCTGTTGCATACGCAGAACAATTACACGGTAAGGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAGCATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_3\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATATGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_4\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_5\n+AAATGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n+AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_6\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n+AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATTCATGTGGTGTTGGAGTAGGA\n+>pur_7\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n+AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_8\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACGGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_9\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_10\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCACTTAGCATAGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_11\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCGGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGT'..b'\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n+CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n+TACAACAATATTAACGATGCAGATGCAGCACTTAGTATTGTAAAAGAATTTACAGAGCCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCGTGTGGTGTTGGAGTGGGT\n+>pur_236\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAGCAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n+CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n+TACAACAATATTAACGATGCAGATGCAGCACTTAGTATTGTAAAAGAATTTACAGAGCCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTGGGT\n+>pur_237\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n+CCATTTGCTGTAACTTCTTCTGTTGCGTACGCAGAACAATTACACGGTAAAGAATTATCT\n+TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAGCCA\n+GCAGTAGTTGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_238\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGTTAATTTCT\n+AACTATTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAACAAGATTTACGTTATGGCGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n+CCATTCGCTGCGACTTCTTCTGTTGCATACGCAGAACAGTTGCACGGTAAAGAATTGTCT\n+TATAACAATATCAACGATGCAGACGCAGCACTTAGCATTGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGCGTTGGAGTGGGT\n+>pur_239\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGAGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTTTATAAAGCA\n+CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAGGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTGAAAGAATTTACAGAACCA\n+GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n+>pur_240\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACGGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGTG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_241\n+AAACGCAAACTAGCTGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGAGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTTTATAAAGCA\n+CCATTCGCTGTAACTTCTTCTGTTGCGTACGCAGAACAATTACATGGCAAAGAATTATCG\n+TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n+GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n+>pur_242\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAATAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n+>pur_243\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGTTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n+CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n+TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCGTGTGGTGTTGGAGTAGGA\n+>pur_244\n+AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n+AAAAAACAAGATTTACGTTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n+CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n+TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n+GCAGTAGTAGCGGTAAAACATATGAATCCGTGTGGTGTTGGAGTAGGA\n+>pur_245\n+AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n+AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n+AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n+CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n+TATAACAATATTAATGATGCAGACGCAGCACTTAGCATAGTAAAAGAATTTACAGAATCA\n+GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/pyc.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/pyc.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1640 @@\n+>pyc_1\n+TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGTGGTTGGCTTAGGCGAT\n+CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_2\n+TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGTGGTTGGTTTAGGCGAT\n+CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_3\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n+CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n+AAAGTAACACCATCATCTAAAGTTGTTGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_4\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCAGTTGGCTTAGGCGAT\n+CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n+AAAGTAACACCATCATCTAAAGTTGTTGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_5\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n+CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n+AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_6\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n+CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_7\n+TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n+AAAGTAACACCGTCATCAAAAGTTGTTGGCGATATGGCGTTATTTATGGTTCAAAACCAC\n+CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n+GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n+ATT\n+>pyc_8\n+TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n+AAAGTAACACCATCATCAAAAGTTGTTGGCGATATGGCGTTATTTATGGTTCAAAACCAC\n+CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n+GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n+ATT\n+>pyc_9\n+TACTATGCTCCATTTGAAAGTGGTATGAATGCTCCTCACACAGAGGTATATATGCATGAA\n+ATGCCGGGTGGACAGTATAGTAATCTTCAACAACAAGCAAAAGCGGTTGGCTTAGGAGAT\n+CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGCGATATTGTA\n+AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAC\n+CTCACAGAACAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n+ATT\n+>pyc_10\n+TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n+AAAGTAACACCGTCATCAAAAGTTGTTGGCGATATGGCATTATTTATGGTTCAAAACCAC\n+CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCGTTGGACTTCCCGGGATCTGTTGTT\n+GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n+ATT\n+>pyc_11\n+TACTATGCACCGTTTGAAAGTGGTATGAATGCGCCTCATACAGAGGTATATATGCATGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGA'..b'+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_196\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGTTTAGGGGAT\n+CGCTTCGATGAAGTAAAAGTAATGTATCGACGTGTGAATGACATGTTTGGTGACATCGTT\n+AAAGTAACGCCATCATCAAAAGTTGTTGGTGATATGGCATTATTTATGGTGCAAAATCAT\n+TTAACAGAACAAGATGTTTTAGAGCGTGGGCATTCTATGGACTTCCCGGGATCTGTTGTT\n+GAAATGTTCTCAGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAACAGTTACAAGAA\n+ATT\n+>pyc_197\n+TACTATGCGCCATTTGAAAGTGGTATGAACGCTCCTCACACAGAGGTGTATATGCACGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAACAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGTTTTGATGAAGTTAAAGTAATGTACCGTCGTGTTAATGACATGTTTGGAGATATTGTA\n+AAAGTAACACCGTCATCTAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAATCAT\n+CTGACAGAACAAGATATTTTAGAGCGTGGACATTCTATGGACTTCCCGGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGTCAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n+ATT\n+>pyc_198\n+TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n+ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n+AAAGTAACACCGTCATCAAAAGTTGTTGGTGATATGGCGTTATTTATGGTTCAAAACCAC\n+CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n+GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n+ATT\n+>pyc_199\n+TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGCAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGAGAT\n+CGTTTTGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGACTTAGGACAACCGTATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_200\n+TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGCGGTCGGCTTAGGCGAT\n+CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAACCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGTGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_201\n+TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAAGAGAT\n+CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n+AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n+TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n+ATT\n+>pyc_202\n+TACTATGCTCCATTTGAAAGTGGTATGAACGCTCCCCATACAGAGGTATATATGCACGAA\n+ATGCCGGGCGGACAGTATAGTAATCTTCAACAACAAGCGAAAGCGGTTGGCTTAGGAGAT\n+CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGCGATATTGTA\n+AAAGTAACACCATCATCTAAAGTTGTGGGTGATATGGCATTATTTATGGTTCAAAATCAT\n+CTGACAGAACAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCGGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n+ATT\n+>pyc_203\n+TACTATGCTCCATTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n+ATGCCAGGCGGACAGTATAGTAATCTTCAACAACAAGCGAAAGCTGTTGGCTTAGGAGAT\n+CGCTTTGATGAAGTTAAAGTGATGTATCGTCGTGTTAATGATATGTTTGGCGATATTGTA\n+AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAT\n+CTGACAGAGCAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGTCAACCATATGGTGGTTTCCCGAAAGAATTACAAAAT\n+ATT\n+>pyc_204\n+TACTATGTACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCACGAA\n+ATGCCGGGTGGGCAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n+CGCTTCGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGACATTGTA\n+AAAGTAACGCCATCTTCAAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAACCAT\n+TTGACAGAACAAGATATTTTAGAGCGTGGACATGCTTTGGATTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTACAAAAG\n+ATT\n+>pyc_205\n+TATTATGCTCCATTTGAAAGTGGTATGAATGCTCCTCACACAGAGGTATATATGCATGAA\n+ATGCCGGGTGGACAGTATAGTAATCTTCAACAACAAGCAAAAGCGGTTGGCTTAGGAGAT\n+CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGTGATATTGTA\n+AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAC\n+CTAACAGAACAAGATATTTTAGAACGCGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n+GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n+ATT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_mlst_db/tpi.fas --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_mlst_db/tpi.fas Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1899 @@\n+>tpi_1\n+GAGTCAGTAAACAAAAAGACTATTGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGTTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_2\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n+CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGAGGCGGTAAAA\n+>tpi_3\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAGGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n+CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGAGGCGGTAAAA\n+>tpi_4\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_5\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTAACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_6\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTAACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n+TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_7\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_8\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGACCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_9\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAGGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCA'..b'GCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n+TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGATGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_204\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCCTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCAGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_205\n+GAATCAGTAAACAAAAAGACTCTAGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCTATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGTACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_206\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGTGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_207\n+GAATCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACGCCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_208\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTAAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_209\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATGTGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_210\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCGGCTGCAGAAGCTGTT\n+CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n+>tpi_211\n+GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n+TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGACCTAGTAGCAGGTCAA\n+GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n+GAGCCAATCTGGGCTATCGGTACAGGTAAATCTACTTCTTCTGCAGATGCAAACGAAGTA\n+TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n+CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n+GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n+CTGGGGGCGGTAAAA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_panC_db/panC.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_panC_db/panC.fasta Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,90 @@\n+>clade3___B_cereus_ATCC_4342\n+ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAATGAAATTCGTACAAGTGGAAAAAGTATTGGCTTTGTCCCAACGATGGGCTATTTGCATGAAGGTCATGCGACTTTATTACGTCAGGCAAGAGAAGAAAATGAAATTGTAGTGTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCGAATGAAGATTTAGATCGATACCCTCGTGATATTAATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTGGAAGAAATGTATCCATCAGAACAAACGACAACAGTTGAAGTTGTAAAGCGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTTGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTACCAACGCGTGCTTATTTCGGTATGAAAGACGCACAGCAAGTTGCTGTCATTGAAGGATTTGTTGCTGATTTTAATATTCCGGTTACAATCGTACCAGTAGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAGCAGAGCGTAAAGAGGCTCCTCATTTATACCGTAGCCTATGTGTAGCGAAAGACAGAATTGAGGCAGGCGAACGGAATGCAGAAATCATTACAACACTTGTGAAAGAGTATATTGAGACGCATACGCAAGGCACTGTAGATTATGCTGATTTATATGCATATCCTTCACTACAAGTAATGGATAAAATTGAAGGGCGAATCATTTTAGCAATCGCAGTTAAATTTGAAAATGTACGATTAATTGACAATATAACAGTAACGGTTAAATAA\n+>clade3___B_cereus_F\n+ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAACGAACTACGTGCAAGTGGAAAAAGTATTGGTTTTGTCCCAACGATGGGTTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCAAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGATGTGTTATGCGGAAAGCAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACACGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTGTCACAAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTATAGCGAAAGAAAGAATTGAGGCAGGAGAACGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATACGTATCCTTCACTACAAGTAGTGGATAAAATTGAAGGACGAATCATTTTAGCAATTGCAGTTAAATTTGACAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n+>clade4___B_thuringiensis_T13001\n+ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACAAGCGAACTTCGTGCAAGTGGAAAGAGTATTGGTTTTGTTCCAACAATGGGTTATTTACATGAAGGCCATGCTACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAACCCACTACAATTCGGCCCAAATGAAGATTTAGATCGATATCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGTGTAGAAGAAATGTATCCAGCAGAACAAACAACAACAGTAGAAGTTGTGAAGCGCACGGACGTATTATGCGGTCAACAAAGACCTGGTCATTTCGCTGGTGTTGCAACTGTACTGATGAAACTATTTAATATTACGGTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCTCAACAAGTTGCAGTAATTGAAGGATTTGTAACTGATTTCAATATTCCAGTTACAATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGTTTAGCGAAAAGTTCTCGTAACGTGTACCTATCACAAGATGAACGTGAAGAAGCTCTTCATTTATACCGCAGCCTATGTATAGCGAAAGAAAGAATTGAGGCAGGTGAACGTAATCCGGAAATCATTACAAATCTTGTGAAAGATTATATTGAGACGCATACGAAAGGCACTGTAGATTATGCGGATTTATATGCATATCCGTCATTAACAATGGTAGAGAAAGTCGAAGGAAGAATCATTTTAGCTATTGCAGTTAAGTTTGAAAATGTAAGATTAATTGACAATATAACATTAACGGTTAAATAA\n+>clade6___B_weihenstephanensis_KBAB4\n+ATGAAAATCATAACTACAGTGCAAGAGATGCAGCAAATTACAAACGAACTGCATGCAAGTGGAAAAAGTATCGGTTTTGTTCCAACGATGGGGTATTTACACGAAGGGCATGCTACGTTACTACGTAAGGCAAGGGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAATCCACTACAATTTGGACCAAATGAAGATTTAGATCGATACCCACGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAATGGTGTTGATTATTTATTTTATCCGAGTGTAGAAGAGATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGACGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTAGCTGTAATTGAAGGATTCGTAACTGATTTTAATATTCCCGTTACGATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAATGTGTATTTATCACTAGAAGAACGTGAAGAGGCTCCTCATTTATACGGCAGTCTATGTATAGCGAAAGAACGAATTGAGGCAGGCGAACGTAATCCGGAAATCATTATGAATCTTGTGAAAGAGCATATTGAGAAGTATACGAAAGGCACTGTAGATTATGCTGATTTATATGCATATCCTTCATTAAAAGCAATAAATAAAATTGAAGGAAGAATCATTTTAGCGATTGCAGTTAAGTTTGAAAATGTACGATTAATTGACAATATAACATTAATGGGGAAATAA\n+>clade3___B_cereus_03BB87\n+ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACAAACGAACTGCGTGCAAGTGGAAAAAGTATTGGTTTTGTTCCAACGATGGGCTATTTACATGAAGGTCATGCGACTTTATTACGTAAAGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTCAATCCGTTACAGTTTGGACCGAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGCAGTTGTGAAGCGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAACATTGCATTGCCAACG'..b'TATTTAACATTACATTGCCAACACGCGCGTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTATAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAAAAGAGCGTAAAGAGGCTCCTCATTTATACCGCAGTCTATGTATGGCAAAAGAAAGAATTGAGGCAGGAGAACGGAATGCAGAAATTATTACAACTCTTGTAAAAGAATATATTGAGACGTATACGAAAGGCACTGTAGATTATGCGGATTTATATGCCTACCCTTCACTACAAGTAGTGGATCAAATTGAAGGGCGAATCATTTTAGCAATTGCAGTTAAATTTGAAAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n+>clade4___B_cereus_B4264\n+ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACTAGCGAACTTCGTGCAAGTGGAAAGAGTATTGGTTTTGTTCCAACAATGGGTTATTTACATGAAGGCCATGCTACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAACCCACTACAATTCGGCCCAAATGAAGATTTAGATCGATATCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGTGTAGAAGAAATGTATCCAGCAGAACAAACAACAACAGTAGAAGTTGTGAAGCGCACGGACGTATTATGCGGTCAACAAAGACCTGGTCATTTCGCTGGTGTTGCAACTGTACTGATGAAACTATTTAATATTACGGTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCTCAACAAGTTGCAGTAATTGAAGGATTTGTAACTGATTTCAATATTCCAGTTACAATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGTTTAGCGAAAAGTTCTCGTAACGTGTACCTATCACAAGATGAACGTGAAGAAGCTCTTCATTTATACCGCAGCCTATGTATAGCGAAAGAAAGAATTGAGGCAGGTGAACGTAATCCGGAAATCATTACAAATCTTGTGAAAGATTATATTGAGACGCATACGAAAGGCACTGTAGATTATGCGGATTTATATGCATATCCGTCATTAACAATGGTAGAGAAAGTCGAAGGAAGAATCATTTTAGCTATTGCAGTTAAGTTTGAAAATGTAAGATTAATTGACAATATAACATTAACGGTTAAATAA\n+>clade3___B_thuringiensis_YBT_020\n+ATGAAAATCATAAATACAGTGCAAGAGATGCAGCAAATTACAAACGAACTACGTGCAAGTGGAAAAAGTATTGGTTTTGTCCCAACGATGGGTTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCAAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGATGTGTTATGCGGAAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGATTGTACTAATGAAACTATTTAATATTACATTGCCAACACGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCCAAAAGTTCTCGTAACGTGTATTTATCACCAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTATAGCGAAAGAAAGAATTGAGACAGGAGAACGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATACGTATCCTTCACTACAAGTAGTGGATAAAATTGAAGGACGAATCATTTTAGCAATTGCAGTTAAATTTGACAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n+>clade1___B_pseudomycoides_DSM_12442_contig00069\n+ATGAAAATTGTAACAACAGTGCAAGAGATGCAGCAAATTGCTAGTGAAATTCGTGCAAGTGGTAAAGATAGCGGTTTTGTTCCAACGATGGGATATTTACACGAAGGGCATGCAACTTTATTACGTCAAGCAAGGGAAGAAAATGAAGTTGTTATTTTAAGCGTATTTGTAAACCCATTACAATTTGGACCAAATGAAGATTTAGATCGCTATCCTCGGGATATCGAGAGAGATGAGAAAGTAGCAAAAGAAGCCGGGGTGGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCTGCAGAACAGACAACAAAGGTTGCAGTTATAAAGCGTACAGACGTATTATGTGGTAAGCAAAGACCGATTCATTTTGCAGGTGTTGCGACTGTATTGATGAAACTATTTAATATTACAATGCCAAAGCGTGCCTACTTCGGTATGAAAGATGCACAGCAAGTCGCTGTTATCCAAGGATTTGTACGTGATTTCAATATTCCAATCACAATTGTACCTGTTGATATCGTTAGGGAAGAGGACGGATTAGCAAGAAGTTCTCGTAATGTATATTTATCAGAAAAAGAACGTGAGGAAGCACCACATTTATATCAAAGCTTATGTATAGCGAAAAAACGAATTGAAGCTGGAGAGCGTAATCCACAAATCATTACATGTCTTGTGAAAGAATATATTGAGGAAAATACACAAGGTATCGTCGATTATGCAGATCTATATGCGTACCCAACTTTGACGGAAGTTGAAACAATTGGTGGGCGTATTATTCTTGCAATTGCAGTGAAGTTTGATAATGCACGTTTAATTGACAATATTACATTAACGGTTGAATAA\n+>clade2___B_wiedmannii_FSL_W8_0169\n+ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAACGAACTTCGTATAAGTGGAAAAAGTATTGGTTTTGTTCCAACGATGGGGTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTCAATCCGCTACAGTTTGGGCCGAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCGGAACAAACGACAACAGTAGCAGTTGTGAAACGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGAGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACGATCGTACCAGTGGATATTGTAAGGGAAGTAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTAAAGCGAAAGAAAGAATTGAAGCAGGCGAATGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATGCCTATCCTTCACTA-CAAGTAATAGATAAAATTGAAGGACGAATGATTTTAGCAATTGCAGTTAAATTTGAGAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa Wed Dec 06 06:01:57 2017 -0500 |
| b |
| b'@@ -0,0 +1,1164 @@\n+>rpoB|AT0001|F40073|Bacillus|licheniformis\n+GCTCTTCGCAATCTCGATGAACGCGGAATTATCCGTGTCGGTGCTGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACCCCTAAAGGTGTTACAGAGCTTACGGCGGAAGAACGCCTGCTTCATGCCATCTTCGGGGAAAAAGCGCGTGAAGTGCGTGATACGTCGCTGCGTGTACCTCACGGAGGCGGCGGTATCATCCTTGATGTAAAAGTGTTCAACCGCGAAGACGGAGACGAACTGCCTCCGGGCGTTAACCAGCTCGTCCGCGTCTACATCGTTCAGAAGCGTAAAATTTCTGAAGGGGACAAAATGGCCGGACGCCACGGTAACAAAGGTGTTATTTCGAAAATTCTTCCGGAGGAAGATATGCCGTATCTGCCTGACGGAACGCCGATTGACATCATGTTAAACCCGCTGGGCGTACCATCGCGTATGAACATCGGGCAGGTGTTGGAGCTGCACCTTGGTATGGCTGCACGCCGCCTCGGTCTGCATGTCGCGTCACCTGTATTTGACGGTGCCCGCGAAGAAGATGTGTGGGAAACCCTTGAAGAAGCCGGCATGTCAAGAGACGCAAAAACCGTCCTTTACGACGGCCGAACTGGGGAGCCGTTTGACAACCGGGT\n+>rpoB|AT0002|F40077|Paenibacillus|odorifer\n+GCTCTGCGCAATCTTGATGAGCGCGGAATCATCCGCATCGGTGCGGAAATCAGCGCTGGTGACATTCTGGTGGGTAAGGTTACTCCTAAGGGTGTAACTGAACTGACAGCAGAAGAACGTCTCCTGCACGCTATCTTTGGTGAGAAAGCTCGTGAAGTACGGGATACCTCTTTACGCGTTCCTCATGGTAGTGATGGTATTATCGTGGACGTTAAAGTCTTTACACGTGAGAACGGCGATGAGCTGCCTCCTGGTGTAAATCAATTGGTTCGTGTCTACATCGCTCAGAAACGTAAGATCTCTGAGGGAGACAAGATGGCCGGACGTCACGGTAACAAGGGTGTCGTTGCCCGTATCCTGCCAGAAGAAGATATGCCGTTCCTTCCGGACGGTACGCCAGTACAGGTTGTTCTTAACCCTCTGGGCGTTCCTTCTCGTATGAACATCGGACAGGTGCTTGAGGTCCATATTGGTATGGCCGCATTGCGTCTGGGAATTCACATTGCAACGCCGGTATTCGACGGAGCGCGTGAGTACGACGTGTTTGATACGATGGAAGAAGCAGGTATGCAGCGTAATGGTAAAACCGTGCTGTATGATGGCCGTACAGGTGAACGCTTCGAACGTGAAGT\n+>rpoB|AT0003|F40079|Bacillus|weihenstephanensis\n+GCACTTCGTAATCTTGACGAGCGCGGTATTATTCGCGTCGGTGCTGAAGTAAAAGATGGAGATCTACTTGTTGGTAAAGTAACGCCAAAAGGTGTAACAGAATTAACGGCAGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAAGCACGTGAAGTACGTGATACATCACTACGTGTACCACACGGTGGTGGCGGTATTATCTTAGACGTAAAAGTGTTTAACCGTGAAGATGGCGATGAATTGCCACCAGGCGTGAATCAACTTGTACGTGCATATATCGTTCAAAAGCGTAAAATTTCTGAAGGTGACAAAATGGCCGGTCGTCATGGTAACAAAGGTGTTATCTCCCGTATTTTACCGGAAGAAGATATGCCTTACTTACCAGATGGTACGCCAATCGATATCATGTTAAACCCATTAGGGGTACCATCTCGTATGAATATCGGTCAGGTATTAGAGCTTCATCTTGGTATGGCAGCAAGATACCTTGGTATTCACATTGCAACACCGGTATTCGATGGTGCTCGTGAGGAAGATGTATGGGGCACAATTGAAGAAGCTGGTATGGCAAATGACGCGAAAACAATCCTGTATGACGGACGTACTGGTGAGCCATTCGATAACCGTGT\n+>rpoB|AT0004|F40085|Paenibacillus|odorifer\n+GCTCTGCGCAATCTTGATGAGCGCGGAATCATCCGCATCGGTGCGGAAATCAGCGCTGGTGACATTCTGGTGGGTAAGGTTACTCCTAAGGGTGTAACTGAACTGACAGCAGAAGAACGTCTCCTGCACGCTATCTTTGGTGAGAAAGCTCGTGAAGTACGGGATACCTCTTTACGCGTTCCTCATGGTAGTGATGGTATTATCGTGGACGTTAAAGTCTTTACACGTGAGAACGGCGATGAGCTGCCTCCTGGTGTAAATCAATTGGTTCGTGTCTACATCGCTCAGAAACGTAAGATCTCTGAGGGTGACAAGATGGCCGGACGTCACGGTAACAAGGGTGTCGTTGCCCGTATCCTGCCAGAAGAAGATATGCCGTTCCTTCCGGACGGTACGCCAGTACAGGTTGTTCTTAACCCTCTGGGCGTTCCTTCTCGTATGAACATCGGACAGGTGCTCGAGGTCCATATTGGTATGGCCGCATTGCGTCTGGGAATTCACATTGCAACGCCGGTATTTGACGGAGCACGTGAGTACGACGTGTTTGATACGATGGAAGAAGCAGGTATGCAGCGTAATGGTAAAACTGTGCTGTATGATGGCCGTACAGGTGAACGCTTCGAACGTGAAGT\n+>rpoB|AT0005|F40087|Paenibacillus|sp\n+GCGCTTCGTAATCTGGATGAGCGCGGTATTATCCGTATCGGTGCTGAAATCAGTGCTGGCGACATTCTGGTTGGTAAAGTAACACCAAAAGGTGTAACGGAACTGACTGCAGAAGAACGTCTCCTGCATGCGATCTTCGGTGAGAAAGCACGTGAAGTACGTGATACTTCCCTGCGTGTACCTCACGGTACTGACGGTATCGTAGTTGATGTAAAAGTCTTTACCCGTGAAAACGGTGATGAACTGCCTCCAGGTGTTAACCAACTCGTTCGTGTCTATATCGCTCAAAAACGGAAAATTTCCGAGGGTGATAAAATGGCCGGACGTCACGGTAACAAAGGGGTCGTGGCCCGTATCCTGCCGGAAGAAGATATGCCTTTCCTGCCGGACGGTACACCAGTTCAAATCGTTCTTAACCCGCTGGGCGTACCTTCCCGGATGAACATTGGTCAAGTACTTGAAGTTCACTTGGGTATGGCAGCCATGCAGCTCGGTATTCACGTAGCTACTCCTGTATTCGACGGAGCGAAGGAGTATGACGTCTTCGATACGATGGAAGAAGCAGGTATGCAGCGAAATGGTAAAACCGTTCTGTACGACGGTCGTACGGGAGAAGAGTTCGAACGTGAAGT\n+>rpoB|AT0006|F40096|Bacillus|licheniformis\n+GCTCTTCGCAATCTCGATGAACGCGGAATTATCCGTGTCGGTGCTGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACCCCTAAAGGTGTTACAGAGCTTACGGCGGAAGAACGCCTGCTTCATGCCATCTTCGGGGAAAAAGCGCGTGAAGTGCGTGATACGTCGCTGCGTGTACCTCACGGAGGCGGCGGTATCATCCATGATGTAAAAGTGTTCAACCGCGAAGACGGAGACGAACTGCCTCCGGGCGTTAACCAGCTCGTCCGCGTCTACATCGTTCAGAAGCGTAAAATTTCTGAAGGGGACAAAATGGCCGGACGCCACGGTAACAAAGGTGTTATTTCGAAAATTCTTCCGGAGGAAGATATGCCGTATCTGCCTGACGGAACGCCGATTGACATCATGTTAAACCCGCTGGGCGTACCATCGCGTATGAACATCGGGCAGGTGTTGGAGCTGCACCTTGGTATGGCTGCACGCCGCCTCGGTCTGCATGTCGCGTCACCTGTATTTGACGGTGCCCGCGAAGAAGATGTGTGG'..b'tropheus\n+GCGCTCCGCAATCTTGACGAACGCGGAATCATCCGTATCGGTGCTGAAGTGAATGACGGAGATCTTCTTGTAGGTAAAGTAACGCCAAAAGGTGTGACTGAACTTACAGCTGAAGAACGCCTGCTTCATGCCATCTTTGGTGAAAAAGCACGCGAGGTCCGTGACACGTCTCTTCGTGTGCCTCACGGCGGCGGCGGAATCATCCACGATGTGAAGGTCTTTAACCGTGAAGACGGTGACGAACTTCCTCCGGGTGTAAATCAGCTAGTACGTGTATATATCGTTCAGAAACGTAAAATTTCTGAAGGAGATAAAATGGCCGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATTCTTCCAGAAGAAGATATGCCTTACCTTCCTGACGGCACACCGATTGATATCATGCTTAACCCGCTTGGCGTACCATCACGTATGAACATCGGGCAAGTATTGGAGCTTCATATGGGAATGGCAGCTCGTTACCTAGGCATTCACATTGCTTCGCCGGTATTTGACGGAGCACGTGAAGAAGACGTGTGGGAAACACTTGAAGAAGCCGGAATGTCCAGAGACGCGAAGACTGTTCTTTACGACGGACGTACTGGAGAGCCGTTTGACAACCGTGT\n+>rpoB|AT0581|K63431|Bacillus|cf|lentus\n+GCACTTCGTAACCTTGATGATCGTGGAATCATCCGTATAGGTGCTGAGGTTAGAGACGGCGATCTGCTTGTTGGAAAGGTAACGCCTAAAGGTGTTACAGAACTTACTGCGGAAGAGCGTCTGTTACACGCTATCTTTGGTGAAAAAGCGCGTGAAGTCCGTGATACATCGCTACGTGTTCCACACGGTGGTGGAGGTATCGTCCTTGACGTCAAAGTGTTCAACCGCGAAGATGGAGACGAACTCCCACCTGGAGTAAACCAACTTGTTCGTGTGTATATCGTACAAAAAAGGAAAATCTCCGAAGGGGATAAAATGGCGGGACGTCACGGAAACAAAGGTGTAATTTCGAAAATACTTCCTGAGGAAGATATGCCGTATATGCCTGACGGAACTCCAGTGGACGTCATGTTGAATCCATTAGGTGTACCTTCTCGTATGAACATCGGTCAAGTGCTTGAAATGCATCTAGGTATGGCTGCAAGACATCTAGGGATTCATATGGCATCACCTGTATTTGATGGTGCTACGGAGGAAGATGTTTGGGAAACAATTGAAGAAGCAGGCATGGATCGTGATGCGAAAACAGTTCTTTATGATGGTCGTACTGGTGAGGCTTTTGATAACCGTGT\n+>rpoB|AT0582|K63458|Bacillus|altitudinis\n+GCTTTACGCAACCTTGACGAGCGTGGAATCATCCGTATTGGTGCAGAAGTAAAAGACGGAGATCTTCTTGTCGGGAAAGTAACGCCTAAAGGTGTAACAGAACTAACAGCTGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAGGCTCGTGAAGTACGTGATACGTCTCTACGTGTACCACACGGCGGCGGCGGAATCATCCACGATGTCAAAGTCTTTAACCGTGAAGATGGAGATGAATTACCACCAGGTGTTAACCAGTTAGTCCGTGTATACATCGTTCAGAAGCGTAAAATTTCTGAAGGTGACAAAATGGCCGGACGACATGGTAACAAAGGTGTTATCTCTAAAATCCTTCCAGAAGAAGATATGCCGTATCTTCCAGATGGAACACCGATTGATATCATGTTAAACCCTCTAGGGGTACCATCTCGTATGAATATCGGTCAGGTACTTGAGCTTCATATGGGTATGGCTGCACGTTACCTAGGCATCCACATTGCGTCACCAGTATTTGATGGTGCTCGTGAGGAAGATGTTTGGGAAACGCTTGAAGAAGCAGGTATGTCCCGTGATGCGAAAACAGTCCTTTATGACGGTCGAACTGGTGAACCATTCGATAACCGTGT\n+>rpoB|AT0583|K60993|Bacillus|subtilis|sl\n+GCGCTTCGCAATCTTGATGACCGCGGAATCATCCGTATTGGGGCAGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACGCCTAAAGGCGTAACTGAACTGACTGCAGAAGAACGCCTTCTTCACGCCATCTTTGGCGAGAAAGCCCGCGAGGTTCGTGATACTTCTCTTCGTGTGCCTCATGGCGGCGGCGGAATTATCCATGACGTTAAAGTCTTCAACCGTGAAGACGGAGACGAACTTCCTCCAGGTGTTAACCAGTTAGTACGCGTATATATCGTTCAGAAACGTAAGATTTCTGAAGGGGATAAAATGGCCGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATTCTTCCTGAAGAAGATATGCCTTACCTTCCTGACGGCACACCAATTGATATCATGCTTAACCCGCTGGGCGTACCATCACGTATGAACATCGGGCAGGTATTGGAACTTCACATGGGTATGGCCGCTCGTTACCTTGGCATTCACATTGCATCTCCTGTATTTGACGGAGCGCGAGAAGAGGATGTCTGGGAAACACTTGAAGAAGCCGGCATGTCTCGTGACGCCAAAACAGTGCTTTACGACGGACGTACTGGAGAGCCGTTTGATAACCGTGT\n+>rpoB|AT0584|K63200|TBD|\n+GCTTTACGCAACCTTGACGAGCGCGGAATCATCCGTATTGGTGCAGAAGTAAAAGACGGAGACCTTCTTGTAGGAAAAGTAACGCCTAAAGGTGTAACTGAACTAACAGCTGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAGGCTCGTGAAGTTCGTGATACGTCACTGCGTGTTCCACACGGCGGCGGCGGAATTATCCACGATGTAAAAGTCTTTAACCGTGAAGATGGAGATGAATTACCTCCAGGTGTAAACCAGTTAGTCCGCGTATACATCGTTCAGAAGCGTAAGATTTCTGAAGGTGACAAAATGGCCGGACGACATGGTAACAAAGGGGTTATCTCTAAAATCCTTCCAGAAGAAGATATGCCTTATCTTCCAGACGGAACACCGATCGATATCATGTTGAACCCTCTAGGGGTACCATCTCGTATGAACATCGGTCAGGTACTTGAGCTTCATATGGGTATGGCTGCACGTTACCTTGGCATCCACATTGCGTCACCAGTATTTGATGGTGCGCGCGAGGAAGATGTTTGGGAAACGCTTGAAGAAGCAGGTATGTCCCGTGATGCGAAAACAGTCCTTTATGACGGTCGAACTGGTGAACCATTCGACAACCGTGT\n+>rpoB|AT0585|K63255|Geobacillus|sp\n+GCGCTGAAAAACTTGGATGAGCGCGGCATTGTCCGCATTGGGGCGGAAGTAAAAGACGGCGACTTGCTCGTTGGTAAAGTGACGCCAAAAGGAATGACTGAGTTGACGGCCGAGGAGCGGCTGTTGCACGCGATTTTCGGTGAAAAAGCGCGCGAGGTGCGCGACACATCGTTGCGTGTCCCACACGGTGGCGGCGGCATTGTCCTCGATGTGAAAGTATTCAATCGCGAAGATGGTGACGAGCTCCCGCCAGGTGTCAACCAGCTTGTCCGCGTCTACATTGTGCAAAAACGGAAAATTTCCGAAGGTGACAAAATGGCGGGTCGTCACGGGAACAAAGGGGTTATTTCCCGCATTCTTCCGGAAGAAGATATGCCGTTCCTGCCAGACGGCACGCCGATCGATATCATGTTAAACCCGCTCGGCGTTCCGTCGCGGATGAACATCGGGCAAGTGTTTGAGCTGCATCTTGGTATGGCAGCCAAAAAGCTCGGTTTGCATATTGCTTCCCCGGTCTTTGACGGGGCAACGGAGGAAGATGTGTGGAACATTCTCGAAGAGGCTGGCATGGCTCGCGATGCAAAAACCGTGCTCTATGACGGCCGGACAGGGGAACCGTTTGACAACCGCGT\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta Wed Dec 06 06:01:57 2017 -0500 |
| [ |
| b'@@ -0,0 +1,1008 @@\n+>1vir___atxA|gi|10956247|149232-149684 Bacillus anthracis virulence plasmid PX01, complete sequence atxA\n+TTAGTTATATTTCTTTTTTAGTTCATAATATGAATGAATATATTCTTTTTTTAATTTATAATAGGAATAT\n+ATCGTACTATAAATTAAATGATCAAAGAACAAATTTATCTGTTCAATTACCACTTTGCATTCTTGACCAG\n+TTGGATTCAAAAGGAATAATGTATTTAATATTTCTTTTTTTCCTTCATTGGTATTATATATAAAATCTGC\n+AATATTTACTTTTGCATCCATACGTTCTTGGGCAATTTTTTTTGAAATATCTTCAATGTCTTGTAAATTA\n+ATTTCTTCTCGCATATACATTGTGAATACATGAAGTAAATGCGTTCCATTTTTAATTATTTCATTTTTAT\n+AAGGATCATGTTCATGAACTAAAATACGTTTTTTCCAATTTGATATAAATTTCTCCTGGCTTTCTTTTAG\n+GTATAAACATAAGTATCGTTTTGTTGCTTCCAT\n+\n+>2vir___bceT|gi|984573|1167-2267 Bacillus cereus bceT gene for diarrheal enterotoxin, complete cds bceT\n+ATGAAAGAGTTAGTTTCAACAGCGCGTATCGGTCGTTCACTCGGGATCCATTTAATATTAGCTACGCAAA\n+AACCGAGTGGTGTTGTAGATGATCAAATTTGGAGTAACTCGAAATTCAAACTAGCATTAAAAGTTCAAAA\n+TACGTCAGATAGTAATGAAATCTTAAAAACGCCAGATGCTGCTGAAATTACATTACCAGGACGTGCTTAC\n+TTACAAGTTGGGAATAATGAAATTTATGAACTATTCCAATCAGCTTGGAGCGGAGCAGACTATGTAGAAA\n+ACAAAGAGGATAAAGAACATTTAGACGCAACAATCTATGCAATAAATGATCTAGGACAATATGAAATATT\n+AAGTGAAGATTTAAGTGGCCTTGGTAGCAGTAAAGAAGTAATAAGCGTACCATCTGAACTGGATGCTGTT\n+ATTGACTACATTCACGATTACGCAGAAATAAATGAAATTGAAGCGTTAGCTAGACCGTGGTTACCACCAC\n+TTCCAGAAAGCGTATATTTACAAGACTTACATGCAATTCAGTTCAAAGAAGCATGGGCGAAAGAAAAGAA\n+ACCATTACAAGCAACAGTTGGTCTACTAGATCAGCCTGAATTACAATCACAAACACCATTAACATTAGAT\n+ATTAGTAAAGACGGACACGTAGCGGTCTTCTCAAGCCCAGGCTACGGAAAATCAACATTCTTACAATCAG\n+TCGTTATGGATGTAGCTCGTCAGCATAGTCCGGAGCATTTGCATGTGTATTTAGTGGACCTTGGAACAAA\n+TGGTCTTCTACCCTTGAAAGGATTACCTCATGTAGCGGATACGATTACGATTGATGAATCTGAAAAATGT\n+TTAAAGTTTGTTGAAAGATTAACTCAAGAAATGAAAAATCGTAAACGATTATTAAGTGAATATGACGTTG\n+CAAATATTGAAATGTATGAAAAGGCAAGCGGGAAAGAAATACCACATATTATTATTGCAATCGACAATTA\n+TGATGCAGTAAAAGAAGCGAAGTTCTATGAAAGCTTTGAAATGCTAATTATGCAAATTGTCCGAGATGGT\n+GCAAGTTTAGGAATTCTATTCTTCTATGTCTTCTTTTACTTCGGCGGATAA\n+\n+>3vir___capA|gi|10956390|54378-55613 Bacillus anthracis plasmid pXO2, complete sequence capA\n+TCAAGTTGTTGTCTCCACTGATACTTGATTTTCTTTTTCTTGCTTATCTTGATGCTCTTGCTTTTCCCTC\n+TTTTTCATTTTTTCAATAACATGTTTATGATTTAATTTGATTTCCAATTTATCATCTTTTTTACTCCATA\n+GAGCACCCTTGGATGTATCTTTTGTTAATTGACGATACACACGATTTTTATCCAATGCACTGGTAACTGG\n+TTTTGGTGATCCCTCTTGAATATTTAAAGGTACAACATCAAGAATTGCAGTACCATTATCACGTAAATGA\n+TATTGCACAAGTGCACTATCTTTTGTTCTTGTCCATCCTTGGTCAAACACAAAGTTACCTAAACTATAGA\n+AGATAATCCCTTGCTTATACACATCAAAAGATTGAAGTACATGCGGATGGTGTCCCACAATAATATCTGC\n+CCCTGCATCAACCATTGCTTTTGCTAAGGCTTCCTGTCTAGGACTCGGTTTATTATCGTATTCTTCCCCC\n+CAGTGCGTATTTACTACGACAAGATCAGCATTACCTTTTTTAGGATCCTTTGCCTTACTAATTTGCTTAA\n+GTAATACATCTGGGTTCATACTTAACGAACCTGGTTGTTCTTTCGTTGCAATAGCTCCTGCTACAAATGC\n+ATCTGTAAATCCAAGAGTAGCAACCCTAACACCATTTACATTTTGATACACAATATTTTTTACATCTTTG\n+AAATTTTCACCAGCACCCACATAGTCAAGATCAGCTTCTTTAAAGGCCTTTATTGTATCTTTAGTTCCCT\n+TAGCACCATAATCCGTCATATGGTTATTCGCCAAATTTAATACTGTAAATCCGGCTTCTTTTACTGCCTT\n+AACTGTTTCTTCTTTTGCACTTAAGTGAATATTCTTATCTGCTTTTTGATAATTCTTTTTATCTTCTAAC\n+AAAACAGGATGTTCGAAATTCCCACTTACGTAATCTGAGTTTTTTAAATATGGCGAAACATGACGAAAAA\n+CATAATCTGTACCGTAACGATTAACAATCTCTTTTACGTGACGTCCCATCATAATGTCACCAACCATCGT\n+CATCGTCAATTTTTCGTTCTCACGATGTTTTACTGGTGCTACTGCTTCTGTACGTTGTACCCATGTCGCA\n+GCTATTAATATAACTGCGATAAGAGGTAATACGATTGCTACATAACGAGGATTTTTTTTCTTGGTTTTCT\n+TAATAAAGATCAGTAACTTTTCTTGAAATGTCAATTTTCGTCTCAT\n+\n+>4vir___capB|gi|10956390|56089-57483 Bacillus anthracis plasmid pXO2, complete sequence capB\n+TTAAATCACTTTTGCTTGCTTTTTGCCAATTTGTTCTTCCATAATCATATCGATTAATGGCTCAGCTGCA\n+CCATGAATATTACCCACTCCATATACAATCCGATTTTTTAAATATGGACGCATACGAGACATAATTTCAC\n+TTGTTGACCAGCCTTCTAAGTTCCAATACTCTTGCGTTGGAATATCTCCTTTTTCAAAAGCACTTGTAAT\n+AGGTGCAGTCGTTTCTCCAATCGCAATAACTATTTCCGCTTTAATATATGGCAAAACATCCCTAGCAAAC\n+TGCTCAGTACGATCAACGCGGTCAGGGCGGCAATTCATAATTACAATTGGAGCTAGATTACTATATCCAA\n+AATCATCCACACGTTCCCAAATACGTAATGTTGATGAGGGATCATTCGCTGCAAAACCATTTACGAAGAA\n+CGCAGGCTTAGATTGGTCAGCAAAACGTGTAATTCTCATTGCTCCTGGATCCGGATGAGCATTCAACATA\n+CCACGGAATGCTGTTTCCTCATCAATCCCAAGAGCCTCTGCTACCGCTAAAGCAAGCGATGCATTATCTG\n+GGAAGACCATGTAATCAAATTTTCGTAAGAATTCTTCTGAAATTCTAGAATTATCCGCAACAATCACTTT\n+TGTATTTCTCTCTTCTGCAACCTCTTTAAAGTAATCCAAGTATTCACTTTCAAT'..b'TATAAAAAATCGGTCAGTAATGAACGATTTGAAAATTATCATTAAAACATTCAAGATAATTTTTTCACCTAATAGTGCATATTGA\n+>41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241]\n+GTGAAAAAAATAAAAAAAGCGATTATTCCAGCAGCAGGACTTGGTACTAGATTTTTACCAGCTACGAAGGCCATGCCTAAAGAAATGCTACCTATCGTCGATAAACCGACAATTCAATACATAGTAGAAGAGGCAATAGAGTCTGGAATTGAAGATATTATTATTGTTACTGGAAAAGGAAAGCGTGCAATTGAAGATCATTTTGATCATTCTTTTGAGTTAGAAAAAAAATTACTAGAAAAAGGAAAGCATGAAGTGCTTGAGAAAGTACAAGCTTCTTCAAAAATTAATATTCATTACATAAGACAAAAAGAGCCAAAAGGGCTTGGGCATGCAGTGTGGTGTGCACGTAAATTCATCGGAAACGAGCCATTTGCGGTATTACTTGGTGATGATATTGTACAAGCTGAAACACCATGTTTACGTCAATTAATGGATGAATATGAAGGAACACAATCAGCTGTAATTGGCGTACAAAAGGTACCAGAAAATGAAGTACATCGCTACGGTATCATTGATCCAGTTGAACAAAATGATCGTCGTTATCAAGTACGTCAATTTGTAGAAAAGCCAGCAGAAGGAACAGCGCCATCAAACTTAGCAATTATGGGACGTTACGTATTAACACCAGAAATCTTTATGTTTCTTGAGAATCAACAAACAGGTGCTGGTGGAGAGATTCAATTAACGGATGCGATTCAACGATTGAATGAAATTCAAAGCGTGTTTGCTTATGATTTTGAAGGAACTCGTTTTGATGTTGGAGAAAAACTAGGGTTTATTAAGACAACGATTGAAATGGCATTGCAGGATAAAGGTATTCAAGAGGAACTATTAAATCATATGGAGTGGTTATTAAAAAGTGAATCTTCTAGGGAGTACAAGTAA\n+>42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241]\n+ATGCAGAGTGTTATTACAAAAACAGACCCCCAATCACCTATCTCAGAACAATATCGAATAGTTAGAACAAATATTTCATTTTTATGTATTAATAATACAATCCGATCCCTAATAGTTACTTCTCCTGAAGCGGGAGAAGGGAAATCAACAACGGCAGTTAATCTTGCAGTTGTGTTTTCACAACAGGGAAAAAGAGTGCTGTTTGTAAATGCTGACCTGCGGAAACAACAAAAAAATTCTATGTTGGAAATCACGGACAATATTGGTTTAACGGATATATTAACGGGAGAAGTGAGCTTAACTTATGCAGTTAAAGAATCAAATATAGAAAATCTGTATCTATTAAATTCTGGATACCCCTCACAAAATCCTTCTGAATTATTAGGGTCAGCAAGAATGGAGGAATTTCTCCAAGAGGCGTATCAAAAATACGATATGATTATTTTTGATACGCCCCCTATGTTAACTGTGTCAGATTCTCAAGTAATGGCGAACCAATGTGATGGAATCATTTTGGTTGTCGATAGTGGAAAGACAAAAATAGAATCGGCGGTTAAGACAAAGAAATTATTACAAACAGTTAAAGGTAAATTACTCGGGGTTGTTCTGAATAATTGTAATAATCAATAA\n+>43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241]\n+ATGGAAAGGATAGTTAGCCTACGTGAAATTATGGCTATTCTTCAAAAGTATTTTAAATTAATTATTTTTACTACACTCTTAGCGGGGGCAATCAGTAGTATTATCAGTTTTTATGTCGTAACCCCCAAATATGAAAAAAAGACACAACTGTTGATTTTTAAACGATTAAATTCTGATCAGGAAGTTTACAATCCAATTGAATTGCAGACAAATTTACAATTAATAAATACATATAATGAAATGATCACAAGTTATAATATCTTAGAAAAAGTAGTAAAGAATTTAAATCTAAATGAAACAGTAGAAGAATTAATAAGTAAAGTTAACATTAAAAATGAAAAAAATTCACAAGTTATTACTATAGTAGTACAAGATAAAAATCCGAAACAAGCTGCAGCGGTTGCTAATGAAATTTCAAGAGTATTTCGGGAAGAAGTCATTAGTATTATGAATCTTGACAATGTTACAGTTCTAACGAAAGCAGATGAGACTGGTGAACAAATACCTGTCAAACCGCAGCCATTACTTAATATAATAGTTGCACTTGTTATTGGTTTATTTGTGGGAGTCGGTATATCCCTTTTAAGGGAATACTCAGATAAAACCATTAGAAGTGAAAAAGATGTGATGAATTCATTAGAATTATCTGTTCTGGGTAGTATTGCAACAAATTCCAATACAAATAATCCAAGAAAGTTTAAAACTAAGAAGAGACCATTTAGAGGTGGAACTATTGATTAA\n+>44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241]\n+ATGAAAAAGAAAATTATATTTTGGATTTTAGGTAGTATAGTTTTTCTTATAATTGCAGGAGGAGCATATACATATTATGTCTGTGTTAATGTATCAAACACATTAGATGCAGTGCATAAGCCGTTGGATCAGGTTAAGTCTGAAAAACGTAATGAAAAAGTAGATATTGTAGACGTTAAGCCAATATCTATATTGTTAATTGGTGTAGACCAAAGAGCTAATGAAACAGGGCGTTCAGATTCACAAATGTTATTTACATTAAATCCACAAAAAAAATCTATGCAAATTACGAGCATTCCACGTGATTCTTATACAGAAATTGTAGGAAAGGGGAAAAAGGATAAGATTAATCATGCATATGCATTTGGTGGCATTGATATGGCTGTAAAAACGTTAGAGAATTTTCTTAATGTACCAGTCGATCATTATATAGAAGTAAATATGTCTGGTTTTCAAGATGTTGTGGATGCATTTGGTGGTGTCGATATTAATAATGATTTAGAATTTAATTATGAAGGTTCGCACTTTACAAAAGGGAATATACACCTTAACGGTACAGAAGCATTAAGATATTCTCGTATGCGTTATGAAGACCCACGTGGTGATTTCGGTCGTCAAATACGGCAACGTCAAATAATTCAAGGAGTAATAAAAAAAGGTGCAAGTGTATCTTCTTTGATAAATTATGGTGACGTATTAAAGGCAATTGAGAAAAACGTAAAAACAAGTTTAAGTCAAGTTCAAATGTTTGATATTCAAAAGAACTATAAAGATTGTATACAGAATATTGTAGAAATCCAAATCCAAGGTGCTGGCCATAAAGCTGCTGATGGCATTTGGTACTATTATGTACCAGAAGACGTAAAACAAGATTTAACGAATAAGTTAAGAGCTCATCTTGAATTGAAGAAGTAA\n' |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_virulence_db/headers.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_virulence_db/headers.txt Wed Dec 06 06:01:57 2017 -0500 |
| [ |
| @@ -0,0 +1,48 @@ +>1vir___bceT|gi|1665720|dbj|BAA04134.1| diarrheal toxin [Bacillus cereus] +>2vir___pagA|gi|4894326|gb|AAD32414.1| pXO1-110 [plasmid] [Bacillus anthracis] +>3vir___hasA|gi|10956340|ref|NP_052789.1| pXO1-93 [plasmid] [Bacillus anthracis] +>4vir___lef|gi|10956354|ref|NP_052803.1| pXO1-107 [plasmid] [Bacillus anthracis] +>5vir___atxA|gi|10956365|ref|NP_052814.1| pXO1-118 [plasmid] [Bacillus anthracis] +>6vir___cya|gi|10956369|ref|NP_052818.1| pXO1-122 [plasmid] [Bacillus anthracis] +>7vir___capA|gi|10956446|ref|NP_053211.1| pXO2-56 [plasmid] [Bacillus anthracis] +>8vir___capC|gi|10956447|ref|NP_053212.1| pXO2-57 [plasmid] [Bacillus anthracis] +>9vir___capB|gi|10956448|ref|NP_053213.1| pXO2-58 [plasmid] [Bacillus anthracis] +>10vir___inhA2|gi|30018848|ref|NP_830479.1| immune inhibitor A precursor [Bacillus cereus ATCC 14579] +>11vir___plcB|gi|30018852|ref|NP_830483.1| phospholipase C [Bacillus cereus ATCC 14579] +>12vir___cytK2|gi|30019265|ref|NP_830896.1| cytotoxin K [Bacillus cereus ATCC 14579] +>13vir___inhA1|gi|30019435|ref|NP_831066.1| immune inhibitor A precursor [Bacillus cereus ATCC 14579] +>14vir___nheA|gi|30019951|ref|NP_831582.1| non-hemolytic enterotoxin lytic component L2 [Bacillus cereus ATCC 14579] +>15vir___nheB|gi|30019952|ref|NP_831583.1| non-hemolytic enterotoxin lytic component L1 [Bacillus cereus ATCC 14579] +>16vir___nheC|gi|30019953|ref|NP_831584.1| enterotoxin C [Bacillus cereus ATCC 14579] +>17vir___entFM|gi|30020092|ref|NP_831723.1| enterotoxin [Bacillus cereus ATCC 14579] +>18vir___hblB|gi|30021213|ref|NP_832844.1| hemolysin BL binding component precursor [Bacillus cereus ATCC 14579] +>19vir___hblA|gi|30021214|ref|NP_832845.1| hemolysin BL binding component precursor [Bacillus cereus ATCC 14579] +>20vir___hblD|gi|30021215|ref|NP_832846.1| hemolysin BL lytic component L1 [Bacillus cereus ATCC 14579] +>21vir___hblC|gi|30021216|ref|NP_832847.1| hemolysin BL lytic component L2 [Bacillus cereus ATCC 14579] +>22vir___hlyII|gi|30021625|ref|NP_833256.1| hemolysin II [Bacillus cereus ATCC 14579] +>23vir___plcA|gi|30021854|ref|NP_833485.1| 1-phosphatidylinositol phosphodiesterase precursor [Bacillus cereus ATCC 14579] +>24vir___entA|gi|30023271|ref|NP_834902.1| enterotoxin / cell-wall binding protein [Bacillus cereus ATCC 14579] +>25vir___hlyR|gi|31322346|gb|AAO74585.1| hemolysin II regulatory protein [Bacillus cereus] +>26vir___clo|gi|62550724|gb|AAX88798.1| cereolysin O [Bacillus cereus] +>12vir___cytK1|gi|114152686|gb|ABI52591.1| cytotoxin K [Bacillus cytotoxicus] +>27vir___cesC|gi|190015504|ref|YP_001967168.1| ABC transporter ATP-binding protein, CesC [plasmid] [Bacillus cereus] +>28vir___cesD|gi|190015506|ref|YP_001967167.1| putative permease, CesD [plasmid] [Bacillus cereus] +>29vir___cesB|gi|190015609|ref|YP_001967169.1| cereulide synthetase B, CesB [plasmid] [Bacillus cereus] +>30vir___cesA|gi|190015727|ref|YP_001967170.1| cereulide synthetase A, CesA [plasmid] [Bacillus cereus] +>31vir___plcR|gi|358355901|dbj|BAL21073.1| PlcR [Bacillus cereus NC7401] +>32vir___cerA|gi|505581110|gb|AGL98059.1| cereolysin A [Bacillus cereus] +>33vir___cerB|gi|505581118|gb|AGL98063.1| cereolysin B [Bacillus cereus] +>34vir___capD|gi|753753473|gb|AJI37081.1| capsule biosynthesis protein CapD [plasmid] [Bacillus anthracis] +>35vir___capE|gi|821583427|dbj|GAO62733.1| polyglutamate capsule biosynthesis protein CapE [Bacillus anthracis] +>31vir___plcR|Bacillus cereus ATCC 14579|NC_004722.1_prot_NP_835011.1_1 [gene=BC5350] [protein=transcriptional activator plcR] [protein_id=NP_835011.1] +>31vir___plcR|Bacillus thuringiensis serovar konkukian str 97-27|NC_005957.1_prot_BT9727_5033_1 [gene=plcR] [protein=transcription activator] [protein_id=YP_039343.1] +>31vir___plcR|Bacillus anthracis str Ames|NC_003997.3:c5081942-5081085_Bacillus_anthracis_str._Ames_chromosome_complete_genome +>36vir___bpsX|NC13_RS05290|BCE_G9241_pBC218_0059|Bacillus cereus exo-polysaccharide operon gene X polysaccharide translocase [plasmid pBC218] [Bacillus cereus str. G9241] +>37vir___bpsA|NC13_RS05295|BCE_G9241_pBC218_0060|Bacillus cereus exo-polysaccharide operon gene A acylneuraminate cytidylyltransferase family protein [plasmid pBC218] [Bacillus cereus str. G9241] +>38vir___bpsB||NC13_RS05300|BCE_G9241_pBC218_0061|Bacillus cereus exo-polysaccharide operon gene B UDP-N-acetylglucosamine 2-epimerase [hydrolyzing] [plasmid pBC218] [Bacillus cereus str. G9241] +>39vir___bpsC|NC13_RS05305|BCE_G9241_pBC218_0062|Bacillus cereus exo-polysaccharide operon gene C polyhydroxyalkanoate synthesis repressor PhaR [plasmid pBC218] [Bacillus cereus str. G9241] +>40vir___bpsD|NC13_RS05310|BCE_G9241_pBC218_0063|Bacillus cereus exo-polysaccharide operon gene D sugar transferase [plasmid pBC218] [Bacillus cereus str. G9241] +>41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241] +>42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241] +>43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241] +>44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241] |
| b |
| diff -r 000000000000 -r 46ebe89f01ea btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta Wed Dec 06 06:01:57 2017 -0500 |
| [ |
| b'@@ -0,0 +1,450 @@\n+>1vir___bceT|gi|1665720|dbj|BAA04134.1| diarrheal toxin [Bacillus cereus]\n+MKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQNTSDSNEILKTPDAAEITLPGRAY\n+LQVGNNEIYELFQSAWSGADYVENKEDKEHLDATIYAINDLGQYEILSEDLSGLGSSKEVISVPSELDAV\n+IDYIHDYAEINEIEALARPWLPPLPESVYLQDLHAIQFKEAWAKEKKPLQATVGLLDQPELQSQTPLTLD\n+ISKDGHVAVFSSPGYGKSTFLQSVVMDVARQHSPEHLHVYLVDLGTNGLLPLKGLPHVADTITIDESEKC\n+LKFVERLTQEMKNRKRLLSEYDVANIEMYEKASGKEIPHIIIAIDNYDAVKEAKFYESFEMLIMQIVRDG\n+ASLGILFFYVFFYFGG\n+\n+>2vir___pagA|gi|4894326|gb|AAD32414.1| pXO1-110 [plasmid] [Bacillus anthracis]\n+MKKRKVLIPLMALSTILVSSTGNLEVIQAEVKQENRLLNESESSSQGLLGYYFSDLNFQAPMVVTSSTTG\n+DLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKG\n+RLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDND\n+GIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEA\n+RHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVS\n+AGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTL\n+ATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIAT\n+YNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAF\n+GFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRN\n+NIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD\n+GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG\n+\n+>3vir___hasA|gi|10956340|ref|NP_052789.1| pXO1-93 [plasmid] [Bacillus anthracis]\n+MKVAVVVPSYNESASAIVNTINSVLAQDYPIHEIFFVDDGSKDKSAYEVALKMREELLRTQREIAATTKN\n+ICSEILGIPDLIVHRLPKNCGKRHAQLWAFKRTTADAIVTIDSDGDLFPNAVRELLKPFNDEKVMATTGH\n+VNIRNRNDNLLTKLIDMRYDNAFRVERAAQSVTGNVLVCSGPLSCYRREVITENLEHYGSQMFLGEEVQF\n+GDDRCLTNYAILKGKTVYQSTARCITDAPTTLKQFLKQQLRWNKSFFRESLISLGIGMKKPNVLVWTIFE\n+ISLWILFGLSLLLSIILKASHVGLILAVYYLGYISLAVYARNVFYLLKHPLTFLLAPLYGILHVLALLPI\n+RFYALLTIKSNGWGTR\n+\n+>4vir___lef|gi|10956354|ref|NP_052803.1| pXO1-107 [plasmid] [Bacillus anthracis]\n+MNIKKEFIKVISMSCLVTAITLSGPVFIPLVQGAGGHGDVGMHVKEKEKNKDENKRKDEERNKTQEEHLK\n+EIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISLEALSEDKKKIKDI\n+YGKDALLHEHYVYAKEGYEPVLVIQSSEDYVENTEKALNVYYEIGKILSRDILSKINQPYQKFLDVLNTI\n+KNASDSDGQDLLFTNQLKEHPTDFSVEFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKF\n+NEQEINLSLEELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKE\n+LLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYD\n+INQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDS\n+TDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGL\n+EIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVE\n+SAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSIL\n+LHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFF\n+AEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINS\n+\n+>5vir___atxA|gi|10956365|ref|NP_052814.1| pXO1-118 [plasmid] [Bacillus anthracis]\n+MEATKRYLCLYLKESQEKFISNWKKRILVHEHDPYKNEIIKNGTHLLHVFTMYMREEINLQDIEDISKKI\n+AQERMDAKVNIADFIYNTNEGKKEILNTLFLLNPTGQECKVVIEQINLFFDHLIYSTIYSYYKLKKEYIH\n+SYYELKKKYN\n+\n+>6vir___cya|gi|10956369|ref|NP_052818.1| pXO1-122 [plasmid] [Bacillus anthracis]\n+MTRNKFIPNKFSIISFSVLLFAISSSQAIEVNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTE\n+FTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASR\n+FVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLF\n+SQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKIS\n+ESLKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNV\n+HGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIIL\n+KGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTA\n+DYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRL\n+NEAVKYTGYTGGDVVNHGTEQDNEEFPEKDNEIFIINPEGEFILTKNWEMTGRFIEKNITGKDYLYYFNR\n+SYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGY\n+LSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKSN\n+IEFKLLYKQLNFTENETDNFEVFQKIIDEK\n+\n+>7vir___capA|gi|10956446|ref|NP_053211.1| pXO2-56 [plasmid] [Bacillus anthracis]\n+MRRKLTFQEKLLIFIKKTKKKNPRYVAIVLPLIAVILIAATWVQRTE'..b'SDRFL\n+VSNMIGLQETGIYTVGSQIAMIIMILQESFNKAWVPWLFSNLKKDKLILKKRIVKITYLY\n+YVVILVGVIILSMISPLVVTWFAGFKYQGADKYIFWLALGYAFNGMYKMVTNYIFYVGKT\n+YYLSIVTAITALINLGLSYLLILLNGAIGAAQATAISYFISFILTFYLSNKVYKMPWALI\n+KNKN\n+>37vir___bpsA|NC13_RS05295|BCE_G9241_pBC218_0060|Bacillus cereus exo-polysaccharide operon gene A acylneuraminate cytidylyltransferase family protein [plasmid pBC218] [Bacillus cereus str. G9241]\n+MYGGKTFVAIIPARGGSKGIPQKNVSVVGGKPLIQYTIDEAQNSKYLDDFIVSTDDREIA\n+KIAKGCGAKVPFLRPKELAGDKIKTIDVLIHAVQSLSVMGKKYDYVVLLQPTQPLRKSMH\n+IDEAIQHIIKKKEQSLVSVNEVNEHPLLMRSINEKGHLESLLKVNSTVRRQDFLKFFKIN\n+GAIYINKINENFNQNTSLNDNRLAYVMEKKYDLDIDELKDLEKFKHLISKELNTG\n+>38vir___bpsB||NC13_RS05300|BCE_G9241_pBC218_0061|Bacillus cereus exo-polysaccharide operon gene B UDP-N-acetylglucosamine 2-epimerase [hydrolyzing] [plasmid pBC218] [Bacillus cereus str. G9241]\n+MKKILFLTGTRADYGKIKSLMWKVQESNKFDLHIFVTGMHNLSKYGSTWREIEKDGFKNL\n+HYFINQKSESCMDMALSNTILGLSNYVHELNPDMIVIHGDRLESLAGAIVGAFNNIKVAH\n+IEGGEKSGTIDESIRHAITKFSHIHLVSNEEAKKRIKQLGELEKNIFVIGSPDIDIMLSE\n+NLPTIEKVKSRYGINFEKYSILMYHPVTTEINRVEENIKNVVDAVKAVEDNYIVIYPNND\n+EGSSIILNEFKRFNGDSKIRLFPSMKFEYFLTLLKHSQYMIGNSSAGIRETGVYGVPSVD\n+IGNRQKGRYCMNELANIIHTQEDKDKIVNSIEILKNKDKCTLKMKKGFFGNGKSDKKFIE\n+LLESKKIWEVEIQKKFIDVVY\n+>39vir___bpsC|NC13_RS05305|BCE_G9241_pBC218_0062|Bacillus cereus exo-polysaccharide operon gene C polyhydroxyalkanoate synthesis repressor PhaR [plasmid pBC218] [Bacillus cereus str. G9241]\n+MKKKYIKIGSRKIGKGYRPLVIVEIGINHEGDLNVAKEMVDAAHKAGAEIIKHQTHVIED\n+EMSNKAKNVIPGNTDVSIFDVMARCALNEPDEIKLKEYVESKGMIYLSTPFSRAAANRLE\n+RMGVLAYKIGSGECNNYPLIEHVASFGKPMIISTGMNNIDSVKKTVEILEKYKIQYSLLH\n+CTNVYPTPASLVRLGGMEELQRTFPNAVIGLSDHTVNNNACLAATALGASVLERHFTDSK\n+SRKGPDIVCSMDPKELEELIKGVAEVAKMRGGKKEAAKEEKITIDFAFSTVVTIEDLRAG\n+ELITKDNIWVKRPGTGEIKAEHFNSLLGKKVTRDIPRDEHLMWNDIEK\n+>40vir___bpsD|NC13_RS05310|BCE_G9241_pBC218_0063|Bacillus cereus exo-polysaccharide operon gene D sugar transferase [plasmid pBC218] [Bacillus cereus str. G9241]\n+MSNTSSISRTESKDRLGYLHEKKSYLFMKRFIDIVAASFGIVLLCWLFFLLAILIKLEDP\n+KGPVFFKQKRLGKKEKEFYMFKFRSMVSNAEELLDSILNLNEVSGAMFKIQKDPRVTKVG\n+KFIRRTSIDELPQLWNVLKGDMSLVGPRPPLPREVVKYTDYDKQRLLVTPGCTGLWQVSG\n+RNDLSFKEMVELDIIYIKNRSVMNDLKIIIKTFKIIFSPNSAY\n+>41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241]\n+MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIESGIEDIIIVTGKG\n+KRAIEDHFDHSFELEKKLLEKGKHEVLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFI\n+GNEPFAVLLGDDIVQAETPCLRQLMDEYEGTQSAVIGVQKVPENEVHRYGIIDPVEQNDR\n+RYQVRQFVEKPAEGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEIQ\n+SVFAYDFEGTRFDVGEKLGFIKTTIEMALQDKGIQEELLNHMEWLLKSESSREYK\n+>42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241]\n+MQSVITKTDPQSPISEQYRIVRTNISFLCINNTIRSLIVTSPEAGEGKSTTAVNLAVVFS\n+QQGKRVLFVNADLRKQQKNSMLEITDNIGLTDILTGEVSLTYAVKESNIENLYLLNSGYP\n+SQNPSELLGSARMEEFLQEAYQKYDMIIFDTPPMLTVSDSQVMANQCDGIILVVDSGKTK\n+IESAVKTKKLLQTVKGKLLGVVLNNCNNQ\n+>43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241]\n+MERIVSLREIMAILQKYFKLIIFTTLLAGAISSIISFYVVTPKYEKKTQLLIFKRLNSDQ\n+EVYNPIELQTNLQLINTYNEMITSYNILEKVVKNLNLNETVEELISKVNIKNEKNSQVIT\n+IVVQDKNPKQAAAVANEISRVFREEVISIMNLDNVTVLTKADETGEQIPVKPQPLLNIIV\n+ALVIGLFVGVGISLLREYSDKTIRSEKDVMNSLELSVLGSIATNSNTNNPRKFKTKKRPF\n+RGGTID\n+>44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241]\n+MKKKIIFWILGSIVFLIIAGGAYTYYVCVNVSNTLDAVHKPLDQVKSEKRNEKVDIVDVK\n+PISILLIGVDQRANETGRSDSQMLFTLNPQKKSMQITSIPRDSYTEIVGKGKKDKINHAY\n+AFGGIDMAVKTLENFLNVPVDHYIEVNMSGFQDVVDAFGGVDINNDLEFNYEGSHFTKGN\n+IHLNGTEALRYSRMRYEDPRGDFGRQIRQRQIIQGVIKKGASVSSLINYGDVLKAIEKNV\n+KTSLSQVQMFDIQKNYKDCIQNIVEIQIQGAGHKAADGIWYYYVPEDVKQDLTNKLRAHL\n+ELKK\n' |