| Previous changeset 2:0d53577b962f (2022-04-11) |
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Commit message:
planemo upload for repository https://github.com/inab/trimal commit 3b2eb8e972bed82a1cd7c1e327b81ecfd994fb3d |
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modified:
trimal.xml |
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added:
README.rst |
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| diff -r 0d53577b962f -r 4769baf47b8d README.rst --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Thu Oct 19 16:50:00 2023 +0000 |
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| @@ -0,0 +1,4 @@ +trimAl +====== + +[trimAl](https://github.com/inab/trimal), a tool for automated alignment trimming in large-scale phylogenetic analyses. |
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| diff -r 0d53577b962f -r 4769baf47b8d trimal.xml --- a/trimal.xml Mon Apr 11 13:07:11 2022 +0000 +++ b/trimal.xml Thu Oct 19 16:50:00 2023 +0000 |
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| @@ -23,6 +23,7 @@ <option value="-gappyout">gappyout. Only uses information based on gaps' distribution. (see User Guide)</option> <option value="-strict">strict. (see User Guide)</option> <option value="-strictplus">strictplus. (see User Guide)</option> + <option value="-automated1">automated</option> <option value="custom">Custom mode</option> </param> <when value="custom"> @@ -92,6 +93,7 @@ -gappyout Use automatic selection on "gappyout" mode. This method only uses information based on gaps' distribution. (see User Guide). -strict Use automatic selection on "strict" mode. (see User Guide). -strictplus Use automatic selection on "strictplus" mode. (see User Guide). + -automated1 Use an heuristic method to decide which is the best automated method for a given MSA. trimAl v1.4.rev15 build[2013-12-17]. 2009-2013. Salvador Capella-Gutierrez and Toni Gabaldón. Custom mode parameters |