| Previous changeset 1:6fbd48e9c950 (2023-07-26) Next changeset 3:82bcfcb60f97 (2023-08-04) |
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Commit message:
Uploaded |
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modified:
plotly_blast_tool/plotlyblast.xml plotly_blast_tool/test-data/htmlout_sample |
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added:
plotly_blast_tool/pbsample.png |
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| diff -r 6fbd48e9c950 -r 47a7eeec4a19 plotly_blast_tool/pbsample.png |
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| Binary file plotly_blast_tool/pbsample.png has changed |
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| diff -r 6fbd48e9c950 -r 47a7eeec4a19 plotly_blast_tool/plotlyblast.xml --- a/plotly_blast_tool/plotlyblast.xml Wed Jul 26 06:35:18 2023 +0000 +++ b/plotly_blast_tool/plotlyblast.xml Wed Jul 26 12:16:56 2023 +0000 |
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| @@ -1,10 +1,10 @@ <tool name="plotlyblast" id="plotlyblast" version="3.0"> <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay--> - <!--Created by toolfactory@galaxy.org at 26/07/2023 15:45:12 using the Galaxy Tool Factory.--> + <!--Created by toolfactory@galaxy.org at 26/07/2023 17:31:09 using the Galaxy Tool Factory.--> <description>Plotly plot generator</description> <requirements> - <requirement type="package">pandas</requirement> - <requirement type="package">plotly</requirement> + <requirement type="package" version="1.5.3">pandas</requirement> + <requirement type="package" version="5.9.0">plotly</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal"/> @@ -44,11 +44,11 @@ a('--input_tab',default='') a('--header',default='qaccver,saccver,piden,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,sallseqid,score,nident,positive,gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles') a('--htmlout',default="test_run.html") -a('--xcol',default='gaps') -a('--ycol',default='qseq') -a('--colourcol',default='qaccver') -a('--hovercol',default='qseq') -a('--title',default='test blast plot of mismatch by bitscore coloured by qaccver ') +a('--xcol',default='') +a('--ycol',default='') +a('--colourcol',default='') +a('--hovercol',default='') +a('--title',default='test blast plot') args = parser.parse_args() df = pd.read_csv(args.input_tab, sep='\t') NCOLS = df.columns.size @@ -69,8 +69,9 @@ else: fig = px.scatter(df, x=args.xcol, y=args.ycol, color=args.colourcol, hover_name=args.hovercol) if args.title: - ftitle=dict(text=args.title, font=dict(size=40), automargin=True) - fig.update_layout(title=ftitle) + fig.update_layout(title=dict(text=args.title, font=dict(size=40))) + + for scatter in fig.data: scatter['x'] = [str(x)[:MAXLEN] + '..' if len(str(x)) > MAXLEN else x for x in scatter['x']] scatter['y'] = [str(x)[:MAXLEN] + '..' if len(str(x)) > MAXLEN else x for x in scatter['y']] @@ -129,7 +130,7 @@ -The main reason to run this tool is to have an interactive hover text specified so it appears when hovering over each data point to supply useful information. +The main reason to run this tool is to have an interactive hover text specified so it appears when hovering over each data point to supply useful information. @@ -163,7 +164,7 @@ :width: 400 - + ------ @@ -183,11 +184,11 @@ a('--input_tab',default='') a('--header',default='qaccver,saccver,piden,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,sallseqid,score,nident,positive,gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles') a('--htmlout',default="test_run.html") - a('--xcol',default='gaps') - a('--ycol',default='qseq') - a('--colourcol',default='qaccver') - a('--hovercol',default='qseq') - a('--title',default='test blast plot of mismatch by bitscore coloured by qaccver ') + a('--xcol',default='') + a('--ycol',default='') + a('--colourcol',default='') + a('--hovercol',default='') + a('--title',default='test blast plot') args = parser.parse_args() df = pd.read_csv(args.input_tab, sep='\t') NCOLS = df.columns.size |
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| diff -r 6fbd48e9c950 -r 47a7eeec4a19 plotly_blast_tool/test-data/htmlout_sample --- a/plotly_blast_tool/test-data/htmlout_sample Wed Jul 26 06:35:18 2023 +0000 +++ b/plotly_blast_tool/test-data/htmlout_sample Wed Jul 26 12:16:56 2023 +0000 |
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| b'@@ -3,12 +3,69 @@\n <body>\n <div> <script type="text/javascript">window.PlotlyConfig = {MathJaxConfig: \'local\'};</script>\n <script type="text/javascript">/**\n-* plotly.js v2.24.1\n-* Copyright 2012-2023, Plotly, Inc.\n+* plotly.js v2.12.1\n+* Copyright 2012-2022, Plotly, Inc.\n * All rights reserved.\n * Licensed under the MIT license\n */\n-/*! 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