| Next changeset 1:af3605b68204 (2016-04-13) |
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Commit message:
Imported from capsule None |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 47c4dfd5aed5 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun Feb 08 09:55:52 2015 -0500 |
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| @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="diamond" version="0.6.13"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url">http://www-ab.informatik.uni-tuebingen.de/data/software/diamond/download/public/diamond-linux64.tar.gz</action> + <action type="move_file"> + <source>diamond</source> + <destination>$INSTALL_DIR</destination> + </action> + </actions> + <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> + <actions> + <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action> + <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action> + <action type="shell_command">false</action> + <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> + </actions> + <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme> + </package> +</tool_dependency> + + + |