| Previous changeset 6:2a39329e51c5 (2018-10-30) Next changeset 8:2aca5aae5d10 (2019-12-05) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 358f82bc5a70186b8fc917fe0f5323a330051b8e |
|
modified:
split_libraries.xml |
| b |
| diff -r 2a39329e51c5 -r 481efc8a2fe2 split_libraries.xml --- a/split_libraries.xml Tue Oct 30 20:03:59 2018 -0400 +++ b/split_libraries.xml Tue Apr 30 09:31:55 2019 -0400 |
| [ |
| @@ -110,8 +110,8 @@ <data name="sequences" format="fasta" from_work_dir="split_libraries/*.fna" label="${tool.name} on ${on_string}: sequences"/> <data name="log" format="txt" from_work_dir="split_libraries/split_library_log.txt" label="${tool.name} on ${on_string}: log"/> <data name="histograms" format="txt" from_work_dir="split_libraries/histograms.txt" label="${tool.name} on ${on_string}: histograms"/> - <data name="quality" format="qual,qual454,qualillumina,qualsolexa,qualsolid" from_work_dir="split_libraries/*.qual" label="${tool.name} on ${on_string}: quality"> - <filter>add_qual['record_qual_scores']!=""</filter> + <data name="quality" format_source="qual" from_work_dir="split_libraries/*.qual" label="${tool.name} on ${on_string}: quality"> + <filter>'record_qual_scores' in add_qual and add_qual['record_qual_scores']</filter> </data> </outputs> <tests> @@ -119,7 +119,7 @@ <param name="map" value="split_libraries/mapping_file.txt"/> <param name="fasta" value="split_libraries/reads_1.fna,split_libraries/reads_2.fna"/> <param name="add_qual_test" value="true"/> - <param name="qual" value="split_libraries/reads_1.qual,split_libraries/reads_2.qual"/> + <param name="qual" ftype="qualillumina" value="split_libraries/reads_1.qual,split_libraries/reads_2.qual"/> <param name="min_qual_score" value="25"/> <param name="qual_score_window" value="0"/> <param name="discard_bad_windows" value=""/> @@ -150,7 +150,7 @@ </output> <output name="log" file="split_libraries/split_library_log"/> <output name="histograms" file="split_libraries/histograms.txt"/> - <output name="quality"> + <output name="quality" ftype="qualillumina"> <assert_contents> <has_text text="PC.634_1" /> <has_text text="bc_diffs" /> |