| Previous changeset 1:9e9f85c20d99 (2015-09-08) Next changeset 3:d6dcb3dd5f8f (2016-03-08) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty |
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modified:
diffbind.xml tool_dependencies.xml |
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added:
diffbind.tar.bz2 |
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| diff -r 9e9f85c20d99 -r 492d5ac7b2e2 diffbind.tar.bz2 |
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| Binary file diffbind.tar.bz2 has changed |
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| diff -r 9e9f85c20d99 -r 492d5ac7b2e2 diffbind.xml --- a/diffbind.xml Tue Sep 08 05:38:45 2015 -0400 +++ b/diffbind.xml Fri Feb 26 13:36:05 2016 -0500 |
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| @@ -1,6 +1,8 @@ <tool id="diffbind" name="DiffBind" version="2.0.2"> <description> differential binding analysis of ChIP-Seq peak data</description> <requirements> + <requirement type="binary">Rscript</requirement> + <requirement type="R-module">DESeq2</requirement> <requirement type="package" version="3.0.3">R</requirement> <requirement type="package" version="1.2.10">deseq2</requirement> <requirement type="package" version="1.8.3">diffbind</requirement> |
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| diff -r 9e9f85c20d99 -r 492d5ac7b2e2 tool_dependencies.xml --- a/tool_dependencies.xml Tue Sep 08 05:38:45 2015 -0400 +++ b/tool_dependencies.xml Fri Feb 26 13:36:05 2016 -0500 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="R" version="3.0.3"> - <repository changeset_revision="a8438aa1207c" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.2.10"> <repository changeset_revision="2d4a7ae561d6" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> @@ -10,7 +10,7 @@ <install version="1.0"> <actions> <action type="setup_r_environment"> - <repository changeset_revision="a8438aa1207c" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="R" version="3.0.3" /> </repository> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package> |