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Commit message:
Imported from capsule None |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 4979d803970a tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 06 11:44:11 2015 -0400 |
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| @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="discoSnp_plus_plus" version="2.1.7"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://gatb-tools.gforge.inria.fr/versions/src/DiscoSNP++-2.1.7-Source.tar.gz</action> + <action type="shell_command">/bin/bash compile_discoSnp++.sh</action> + + <!-- move directories into $INSTALL_DIR --> + <action type="move_directory_files"> + <source_directory>build</source_directory> + <destination_directory>$INSTALL_DIR/build</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>tools</source_directory> + <destination_directory>$INSTALL_DIR/tools</destination_directory> + </action> + + <!-- move files into $INSTALL_DIR --> + <action type="move_file"> + <source>run_discoSnp++.sh</source> + <destination>$INSTALL_DIR</destination> + </action> + + <action type="move_file"> + <source>run_VCF_creator.sh</source> + <destination>$INSTALL_DIR</destination> + </action> + + <action type="chmod"> + <file mode="755">$INSTALL_DIR/run_VCF_creator.sh</file> + </action> + + + <!-- create env.sh --> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This package installs discoSNP++ from the sources availbale in the Colib'reads web site. + </readme> + </package> +</tool_dependency> |