| Previous changeset 6:65e95d0b8838 (2023-11-13) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points/ commit c045f067a57e8308308cf6329060c7ccd3fc372f |
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modified:
projective_transformation_points.xml |
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added:
creators.xml |
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| diff -r 65e95d0b8838 -r 499ad4d9aa13 creators.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/creators.xml Thu Apr 04 15:26:12 2024 +0000 |
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| @@ -0,0 +1,23 @@ +<macros> + + <xml name="creators/bmcv"> + <organization name="Biomedical Computer Vision Group, Heidelberg Universtiy" alternateName="BMCV" url="http://www.bioquant.uni-heidelberg.de/research/groups/biomedical_computer_vision.html" /> + <yield /> + </xml> + + <xml name="creators/alliecreason"> + <person givenName="Allison" familyName="Creason"/> + <yield/> + </xml> + + <xml name="creators/bugraoezdemir"> + <person givenName="Bugra" familyName="Oezdemir"/> + <yield/> + </xml> + + <xml name="creators/thawn"> + <person givenName="Till" familyName="Korten"/> + <yield/> + </xml> + +</macros> |
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| diff -r 65e95d0b8838 -r 499ad4d9aa13 projective_transformation_points.xml --- a/projective_transformation_points.xml Mon Nov 13 22:12:09 2023 +0000 +++ b/projective_transformation_points.xml Thu Apr 04 15:26:12 2024 +0000 |
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| @@ -1,5 +1,13 @@ -<tool id="ip_projective_transformation_points" name="Performs projective transformation" license="MIT" version="0.1.1-2" profile="20.05"> +<tool id="ip_projective_transformation_points" name="Perform projective transformation of point coordinates" license="MIT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> <description></description> + <macros> + <import>creators.xml</import> + <token name="@TOOL_VERSION@">0.1.1</token> + <token name="@VERSION_SUFFIX@">3</token> + </macros> + <creator> + <expand macro="creators/bmcv"/> + </creator> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> @@ -22,8 +30,8 @@ ]]> </command> <inputs> - <param name="input" type="data" format="tabular" label="ROIs (pixel coordinates) to be transformed (TSV file)" /> - <param name="tmat" type= "data" format="tabular" label="Transformation matrix (TSV file)" /> + <param name="input" type="data" format="tabular" label="Point coordinates to be transformed" help="Must be a TSV file." /> + <param name="tmat" type= "data" format="tabular" label="Transformation matrix" help="Homogeneous transformation matrix (3⨉3)." /> </inputs> <outputs> <data format="tabular" name="output" /> @@ -36,15 +44,20 @@ </test> </tests> <help> - **What it does** - This tool performs a projective transformation of regions of interest (ROIs) defined by pixel (point) coordinates with/without labels. + **Performs projective transformation of point coordinates.** + + This tool performs a projective transformation of point coordinates with/without labels. - About the format of point coordinates (and labels) in the input TSV table: - 1st column: x-coordinate; - 2nd column: y-coordinate; - (optional) more column(s): point label(s) (numerical or categorical). - The top row of the table will be regarded as column headers. + The input point coordinates to be transformed must be in the following format: + + **Column 1:** The horizontal coordinate. + + **Column 2:** The vertical coordinate. + + **Further columns:** Point labels (numerical or categorical, optional). + + The frist row of the table will be regarded as column headers. </help> <citations> |