Previous changeset 1:fd62f1b940f6 (2019-10-23) Next changeset 3:8afa8799d50f (2020-10-02) |
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sina commit e94aa6daf5746ddd3798b8b3d8bc92094b03be90" |
modified:
macros.xml sina.xml |
b |
diff -r fd62f1b940f6 -r 49b937f12aa4 macros.xml --- a/macros.xml Wed Oct 23 18:55:29 2019 -0400 +++ b/macros.xml Wed Dec 25 12:09:28 2019 -0500 |
b |
@@ -1,10 +1,10 @@ <macros> <token name="@TOOL_VERSION@">1.5.0</token> - <token name="@WRAPPER_VERSION@">galaxy0</token> + <token name="@WRAPPER_VERSION@">galaxy1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">sina</requirement> <yield/> </requirements> </xml> -</macros> \ No newline at end of file +</macros> |
b |
diff -r fd62f1b940f6 -r 49b937f12aa4 sina.xml --- a/sina.xml Wed Oct 23 18:55:29 2019 -0400 +++ b/sina.xml Wed Dec 25 12:09:28 2019 -0500 |
b |
@@ -1,4 +1,4 @@ -<tool id="sina" name="SINA" version="@TOOL_VERSION@+@WRAPPER_VERSION@"> +<tool id="sina" name="SINA" version="@TOOL_VERSION@+@WRAPPER_VERSION@" profile="18.01"> <description>reference based multiple sequence alignment</description> <macros> <import>macros.xml</import> @@ -11,18 +11,18 @@ #if $db.select == 'custom' #if $db.custom.ext == 'fasta' - sina -i '$db.custom' --prealigned -o ./reference.arb && + sina -i '$db.custom' --prealigned -o reference.arb && #else - ln -s '$db.custom' ./reference.arb && + ln -s '$db.custom' reference.arb && #end if #elif $db.select == 'local' - ln -s '$db.arb_databases.fields.path' ./reference.arb && + ln -s '$db.arb_databases.fields.path' reference.arb && #end if ## run sina --in='$in' - --db=./reference.arb + --db=reference.arb -p \${GALAXY_SLOTS:-4} --num-pts=\${GALAXY_SLOTS:-4} @@ -327,7 +327,7 @@ <test> <param name="in" value="sequence.fasta"/> <conditional name="db"> - <param name="select" value="local"/> + <param name="select" value="local"/> <param name="arb_databases" value="testarb"/> </conditional> <section name="os"> |